BtaINT0159773 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11485174-11485443:+
Coord C1 exon
chr22:11485174-11485252
Coord A exon
chr22:11485253-11485344
Coord C2 exon
chr22:11485345-11485443
Length
92 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AGCCCCACTTCTGATCCCAGAAC
3' ss Score
3.89
Exon sequences
Seq C1 exon
AGTCTGCCAGAAGAGCAAGGATCTGGTGGTCCAAGAGTTGTCGACCTGCCCATTGACCCAAGACCTGCTTCAGGAGGAG
Seq A exon
GTGAGGCAGGCTTGGTCCCAGCCATCCCCATCCACTCCATAACTCCAGCCCACTCCGGACCACATACTGACCAGCCCCACTTCTGATCCCAG
Seq C2 exon
AACTGCTACATCCTGGATCAGGGTGGCTTCAAGATCTACGTGTGGCAGGGACGCCGGGCCAGCCTCCAGGAGAGAGGGGCTGCCTTCAGGAGGGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(19.7=55.6)
A:
NA
C2:
PF0062617=Gelsolin=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGCCAGAAGAGCAAGGA
R:
CTGAAGGCAGCCCCTCTCTC
Band lengths:
168-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]