HsaINT0180213 @ hg38
Intron Retention
Gene
ENSG00000136059 | VILL
Description
villin like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr3:37998090-37998364:+
Coord C1 exon
chr3:37998090-37998168
Coord A exon
chr3:37998169-37998265
Coord C2 exon
chr3:37998266-37998364
Length
97 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AGCCCCACCCTTGCTCCCAGGAC
3' ss Score
6.09
Exon sequences
Seq C1 exon
TGTCTATGAGAAGGGCAAAGACCTGGTGGTCCTGGAGTTGGCGACCCCCCCACTGACCCAGGACCTGCTGCAGGAGGAG
Seq A exon
GTGAGGAAGGCCTGGCCCCAGCTACTTGCATCCTTCCCCATCCACAACCCCAGCCCAGTCTGGACCACCTACTGACCAGCCCCACCCTTGCTCCCAG
Seq C2 exon
GACTTCTACATCCTGGACCAGGGTGGCTTCAAGATCTATGTGTGGCAGGGACGCATGTCTAGCCTCCAGGAGAGAAAGGCTGCCTTCAGCCGGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059:ENST00000283713:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.002
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(19.7=55.6)
A:
NA
C2:
PF0062617=Gelsolin=FE(42.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTATGAGAAGGGCAAAGACC
R:
TGAAGGCAGCCTTTCTCTCCT
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains