RnoINT0162888 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127744163-127744424:+
Coord C1 exon
chr8:127744163-127744241
Coord A exon
chr8:127744242-127744325
Coord C2 exon
chr8:127744326-127744424
Length
84 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGG
5' ss Score
6.35
3' ss Seq
GCTCACAAGCTTTTTCCTAGGGC
3' ss Score
1.18
Exon sequences
Seq C1 exon
TGTCTTCGAGAAGGGAACAGACCTGGTGGTCCAGGAACTGGCGACCCGCCCACTGACCCAGGACCTGCTGCAGGAGGAT
Seq A exon
GTAAGGAAAGCGATGCCCAATACCTGCCCATCCCCACCTCCTGGCCCCAGTCCCTGCCAACCAGGCTCACAAGCTTTTTCCTAG
Seq C2 exon
GGCTGCTATCTCCTGGACCAGGGTGGCTTCAAGATCTACATGTGGCAGGGACGAAAGTCCAGCCCCGAGGAGAGGAAGGCTGCCTTCAGCAGGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(20.8=59.3)
A:
NA
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGAGAAGGGAACAGACCTGG
R:
AAGGCAGCCTTCCTCTCCTC
Band lengths:
160-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]