MmuINT0172953 @ mm9
Intron Retention
Gene
ENSMUSG00000038775 | Vill
Description
villin-like [Source:MGI Symbol;Acc:MGI:1201781]
Coordinates
chr9:118971560-118971822:+
Coord C1 exon
chr9:118971560-118971638
Coord A exon
chr9:118971639-118971723
Coord C2 exon
chr9:118971724-118971822
Length
85 bp
Sequences
Splice sites
5' ss Seq
GACGTAAGG
5' ss Score
7.23
3' ss Seq
ACTCACAACCTTTTTCCTAGGGT
3' ss Score
6.13
Exon sequences
Seq C1 exon
TGTCTGTGAGAAGGGGACAGACCTGGTGGTCCAGGAACTGGCGACCCGCCCACTGACCCAGGACCTCCTGCAAGAGGAC
Seq A exon
GTAAGGAAAGCCTAGCCCAGTACCCTACCCATCCCTACCTCCTGGCCCCAGCCCCTGCCAACCAGACTCACAACCTTTTTCCTAG
Seq C2 exon
GGTTGCTATCTCCTGGACCAGGGTGGCTTCAAGATCTACATGTGGCAGGGACGAAAGTCCAGCCCCCAGGAGAAGAAGGCTGCCCTCAGCAGGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038775-Vill:NM_011700:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(20.8=59.3)
A:
NA
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTGAGAAGGGGACAGA
R:
CTGAGGGCAGCCTTCTTCTCC
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: