DreINT0022388 @ danRer10
Intron Retention
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20288002-20288284:-
Coord C1 exon
chr24:20288206-20288284
Coord A exon
chr24:20288101-20288205
Coord C2 exon
chr24:20288002-20288100
Length
105 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGA
5' ss Score
1.76
3' ss Seq
GATGTATGTCTTGTTTGCAGGAT
3' ss Score
8.93
Exon sequences
Seq C1 exon
GGTGTCAGACGCCAGTGGTCAGCTGTTGGTACAGGAAGTGGCTGTCAGTCCACTCACCCAGGATCTGCTGTGCTCCTCT
Seq A exon
GTGAGACATCAAAATTCAAATCTCAATACCTAATGCTTCACATTACCATTATATAATTACACAACTGAAAGTGGATGAATGGTTTGATGTATGTCTTGTTTGCAG
Seq C2 exon
GATTGCTATATTTTAGATCAAGGTGGCACCTCGATAATGGTCTGGAAGGGAAAAGGAGCTTCAAATGAAGAGAGGCGCTCGGCGATGGGCCGGGCAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909:ENSDART00000048940:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(20.8=59.3)
A:
NA
C2:
PF0062617=Gelsolin=FE(41.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGACGCCAGTGGTCAG
R:
CGAGCGCCTCTCTTCATTTGA
Band lengths:
158-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]