BtaINT0159774 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012963 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr22:11485345-11486184:+
Coord C1 exon
chr22:11485345-11485443
Coord A exon
chr22:11485444-11486045
Coord C2 exon
chr22:11486046-11486184
Length
602 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
TCACCCAACTCCCGCCCCAGAAC
3' ss Score
6
Exon sequences
Seq C1 exon
AACTGCTACATCCTGGATCAGGGTGGCTTCAAGATCTACGTGTGGCAGGGACGCCGGGCCAGCCTCCAGGAGAGAGGGGCTGCCTTCAGGAGGGCTCTG
Seq A exon
GTGAGGCTGGGGGCCCTGTCTCAGAGGGTCGTTGTGCCACCCTGGGGTCTGAGGATGGGGGACATCTGTGTTCTGGGGTCTAAAGGGAGGGGTAGTCCTGCCCTGGAGCCAGGAGGGGGATACCTCGTGCCCTTGGAGCCCTGTCTGATGGAGGAGAATATAACCCGGTCCCGGGGTCCGAGCCTGGAGACCCACTGCCCTATCTGAGGGAGGAGACACACTCTGACCACAGATCCCAGGGGAACACACGGCCCCTCTCTAGGGTACCACAGGCTTGTGGTCTTGAGGTACAAGGTCTTGTACCTTGAGGTCTGAGGATTTTCCAGCACTGGGCCCACCTTCCTTTTCCAGGAAGGGAGGCAGGGTTCTGCCTGGGGTCTGAGGGGTGGTCATAGCCCGCCCTTCCGGAGGCCCGGAGTAAGGGGAACCTGCGTGTCCTTGGGGACCTCGGAGAAATCGGTAGTGTCAGAGCCAGCTCCTTATATGGGTCACGAGCTCAGTTAATTAATGCTGCTCAGTGCACAGCTGGCCCCGCAGCTCCCGCGGGGTAGAGTGGAGCAGTGGGCCCCTGGGCCACACGCCTCACCCAACTCCCGCCCCAG
Seq C2 exon
AACTTCATCCAGGCCAAGGGCTACCCGAGCTACACCAGCGTGGAGGTGATGGACGACGGCGCCGAGTCGGCCGGGTTCAAGCAGCTCTTCCGATCGTGGTCTGGGCAGCAGCGCAAGAACAAGAACCTTAGTGGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012963:ENSBTAT00000017231:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(42.1=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(34.2=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCTACATCCTGGATCAG
R:
CCATCCCACTAAGGTTCTTGT
Band lengths:
238-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]