RnoINT0162889 @ rn6
Intron Retention
Gene
ENSRNOG00000011446 | Vill
Description
villin-like [Source:RGD Symbol;Acc:1304843]
Coordinates
chr8:127744326-127745083:+
Coord C1 exon
chr8:127744326-127744424
Coord A exon
chr8:127744425-127744947
Coord C2 exon
chr8:127744948-127745083
Length
523 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGG
5' ss Score
6.13
3' ss Seq
CTGACGGAGCTGTGTTCCAGGGC
3' ss Score
2.24
Exon sequences
Seq C1 exon
GGCTGCTATCTCCTGGACCAGGGTGGCTTCAAGATCTACATGTGGCAGGGACGAAAGTCCAGCCCCGAGGAGAGGAAGGCTGCCTTCAGCAGGGCTGTG
Seq A exon
GTGAGGTCCTGGGGCCCTTCAGGGAGGCAGCCTGTGGTCAGGTCTGGTGGTATAGGATAGCCTGCAACAGGGGAGGGTGGTGTAAGGGAAGAACTGGCTCTCCCTTGGAACATCTTTATCCTGGGGACTCCAAGGAGAGGGCAGAAAGTGAGTATGTCTGCCCTGGAAACCTTGAGCAGGAGGGAAGGTGCTGAACACAGGAGACAGCATGTGTGCAGTCTTGCCTTGCCTTGAGGCGGGAGAGCCTTCTGCCCTGAGGTTCGGAGGCAGAAGACGTTTATTAGACTGTAGGGTTTGTCATGGCCAGCCCTTCACCAGGCTTGGCTTGAGGAGACCCTATCTTCCCTCAGGGACCTTGGGAGAGTCGGTAGTGCAGGAGTCGGCTTGTTAAATGGGTCACAAGTTTGGTTAATTAACTCAGCTGCGAGCCTGGTTGTCCTTGTAGCCACAACTGGGGTGTCTCTGGGGGGTGGAACACAGCCAAAGGCCTTTGAGCCACAAGCCTGACGGAGCTGTGTTCCAG
Seq C2 exon
GGCTTCATCCAGGCCAAGGGTTACCCAAACTACACCAATGTGGAGGTGGTGAACGACGGCGCGGAGTCCACAGCCTTCCAGCAGCTTTTCTGGACATGGTCGAAGGAGCTAAATGGGAAAAAACACCCGAGGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011446:ENSRNOT00000015888:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.6=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(33.8=56.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTGCTATCTCCTGGACCAG
R:
TCCCATTTAGCTCCTTCGACCA
Band lengths:
217-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]