HsaINT0180214 @ hg19
Intron Retention
Gene
ENSG00000136059 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:30906]
Coordinates
chr3:38039757-38040541:+
Coord C1 exon
chr3:38039757-38039855
Coord A exon
chr3:38039856-38040402
Coord C2 exon
chr3:38040403-38040541
Length
547 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
GACGATGCCTTCCGCCCCAGGGC
3' ss Score
7.46
Exon sequences
Seq C1 exon
GACTTCTACATCCTGGACCAGGGTGGCTTCAAGATCTATGTGTGGCAGGGACGCATGTCTAGCCTCCAGGAGAGAAAGGCTGCCTTCAGCCGGGCTGTG
Seq A exon
GTGAGCCCTGGGGCTCTGTCTGAGAGGAACAGAGCACTGCCCTGGGGTCTGAGTGGGGAGGCAGCTCCGCCCCAGGGTCTAAGGGAGGAATCAGCCCTCCCCTAGAGTTTGAGTTGGGAAATCCTATGCTGGAGTCTTAAAGGGGAGGTAGCCCTGCCCTGGGAGCCCTGAGAGTAAAGACCAGGTGGCCTCTGAGAAACCATGTGTAAAAGGGGCACGTGGCCCTGCCTTCAGGTCTGGGGCCCTACTGACTGGGCGGTCCCGCTTTCTGAGGGTGGGGCTGGGGAGGAGACAGGGCTCTCTCTGTCTGGGGTCCGTGAGGGTTGACATGGCCTGTCCTGCACGAGGCCTAGACTAAGGGGGCCCTGCCTGCCCTCAGGGACCTCAGAGAAGTCGGTGGTGACAGAGTCAATTCGCTAAGTGGGTCATGAGCTCGGTTAATTAACGCTTCTTGGAGCTCGGCTGTCCCAGAGCGGTAGGTCCCCAGGAGCGGCAGTGGGGCAGTGGACTCTCAGGGTCGCAGGACTGACGATGCCTTCCGCCCCAG
Seq C2 exon
GGCTTCATCCAGGCCAAGGGCTACCCGACCTACACCAACGTGGAGGTGGTGAACGACGGCGCCGAGTCGGCCGCGTTCAAGCAGCTCTTCCGGACTTGGTCTGAGAAGCGGCGCAGGAACCAGAAGCTCGGCGGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136059-VILL:NM_015873:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(42.1=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(34.2=55.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCTACATCCTGGACCAG
R:
CCGAGCTTCTGGTTCCTGC
Band lengths:
230-777
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)