DreINT0022370 @ danRer10
Intron Retention
Gene
ENSDARG00000001909 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr24:20287762-20288100:-
Coord C1 exon
chr24:20288002-20288100
Coord A exon
chr24:20287916-20288001
Coord C2 exon
chr24:20287762-20287915
Length
86 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGT
5' ss Score
8.3
3' ss Seq
ACAAATGTTCATCGACACAGGGA
3' ss Score
5.06
Exon sequences
Seq C1 exon
GATTGCTATATTTTAGATCAAGGTGGCACCTCGATAATGGTCTGGAAGGGAAAAGGAGCTTCAAATGAAGAGAGGCGCTCGGCGATGGGCCGGGCAGTT
Seq A exon
GTAAGTACAAAAGTTTGTGAATTATTATTATTCTCCAAAATGGCCAAAATCTTTCACAATTGGTGCACAAATGTTCATCGACACAG
Seq C2 exon
GGATTTATAAAAGCAAAGAACTACCCGGCCAGCACTAAAGTGGAGGTCATGAGTGAAGGAGGAGAATCTGCTATGTTTAAACAGCTCTTCAAGTCTTGGACTGAAAAAGGTCAAACTCAAGGCCTGGGAAAGACACACTCAGTAGGAAAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001909:ENSDART00000048940:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.6=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(33.8=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAATGAAGAGAGGCGCTC
R:
GTGTCTTTCCCAGGCCTTGAG
Band lengths:
176-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]