GgaINT0102132 @ galGal4
Intron Retention
Gene
ENSGALG00000005763 | VILL
Description
villin-like [Source:HGNC Symbol;Acc:HGNC:30906]
Coordinates
chr2:4581221-4583692:+
Coord C1 exon
chr2:4581221-4581319
Coord A exon
chr2:4581320-4583538
Coord C2 exon
chr2:4583539-4583692
Length
2219 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TGTCCCTTTTCAACCTCTAGGGT
3' ss Score
11.06
Exon sequences
Seq C1 exon
GACTGCTACATTTTAGACCAAGGTGGCTTTAAGATTTACGTCTGGAGAGGAAAGGCCTCCAACCAGGAGGAGAAGAAAGCAGCCTTCACTCGAGCTGTG
Seq A exon
GTGAGTGGTAATGCAGTGCCAATGATGTCGTGGGAGGTTAAACAGGCACTAATCTGGATCTGACCACTAATTATGATTAAGTGTGGGTCTTGAGGAACCAGCCTGAGTAATAACAGAGGAAGAATTTAAACTTCTAAGGGAGGTGTGATGACATAATGTGAAATGGTTGTTCGTCAAATCTCACTGAGAGCTAGCTGTCACTGAAACTAAGAGGAAACTGATTACAGGAGAGAAGATGTAGAAGGGAATACTATATGTGACGCAGTAAGTAGTAGACTTCTGGGATCCACTGCTTCAAGGGGTGGTGGAGGCAGAATGTATCAGCAGGGCTGAGAAGGAATTATACCAATTTATGGTCAATAAACAGATATTAAAGGGAGGAGGCTCTTAAAATCTCTGTAACATCCGTGATCCCATACTGTGGGCGTTGGGATGAATGGATTGCACTGCAGATAGTCACCACTCTCATGTGTGCTTGCTAAACAGCATCTCTTACTGTCCAGCAGCACAGACCAGAAAGGCATGTCTTGTGTTCCCAAATGAGTGTAATACTTCTGAGCAGGTCACTGGGGAATTTGATGACTCAGGCTCTCTGAAAAAAAAAAAAACAGAAATGGATATGTAAGTGCTACCAGCACCAACCCCAAGTCCATTACAGGCAACGGTATTTTTCACAGCACTGATGGGTTTTGGCCCAGGTTCTACATGTGAATTGGAAGCTTACATGGGGCTCTTCCACGTGGTAGAAAGAGCTCTGCTGTTAACTGCTACTAACCTGGACCAGCTGACCTGCAGCAAAACCATGGCTTCTGTTAGGGCAGAGCACTTCAGCATAGCACACCTCTGTGTCTCCTTCAGGTAATCTGTCATTTTCTGGCAGCCTCAGCTCTTCCTTTCAAAGCTGGCCTCACGGGAGCCTGAGTGTAGAGGGCATTTGGTAGTATTTCATGTCACTTGGCATGTGGAAGTGAATAATACTGAATAACTTTGTTTTTAATTCATCTGTTGACTTATGTGAAGACCATAAATAGCTTCATCTTCAGTGAGATCTTCCTTGGAGATACTGAACTTCAGTGGCCCCACCTTCAATAAGGTCTTACCTGGAGATACCTGGCTACAATGCCAGTTGCACCTATTGTCTCAGAAAAGCTTAGACAAACTCTGACTAAAACCATCTCACAATCCTCTGCTTCTCCTTTCAAAAGCTGAACTCAGCTGCTTTATATAGGCAATCAGCTCTGCAAATTCTGGCCCTGGGCTACAAATGTAGAACAAAAGACATCTCTTTCTTTCAGCGTGGCAGGTGGGAGGGATGGGAAGACCATCTGCTCTGCTTTTCCCTGGGGGTAGTGTGTGGCTACGGTATTTACAGCAGAAGATGAATTCTCCGAAGCCCACACTCAGGCTCCTTCCCAAACCATGGCTGTCAGCACCGTACCTCTGGGTCATCCTGGAGTCTGCTGAGCCAAACACGAGAGCAGTTCTCAAAAACTAAGCAATGACTTTGACACTGGGGCAGACGGAGAGCAGATCATTCTCATCCTTACCACGTTGTATCAGACACTTCTGTTGAAGCACTCTCTTAACTCAGTGGCTGCTCTCTTTCAAGGAAATAATTTGTTTTGAGGAAAAGGAGGGGAAAAAAAAAAGAGACTTTTGTAGTTTTATCCCTTCAGAGCATGTTGCACTCTGGGATATGTAACTGCCTGCATTCCTTCCTCGGCATACAAGCTCTCTATCATGCTAAAGGGAGAACAAGATTCCTGTTTAGAGAAGGTCAAAGAGCTGGGAGAAAAGCAAACTCGGTTCATGGGCCTAGTTCCATCTCTGCTTACCATCTCAGATCCTGGATCTGCCACTAGAAGCTGTCTGTAGAGCTGAATAAGATATTCTCTATCATCACAAGGCTGTTTGTTAGGCTTGTTGTGTGAGATTTTTCAAAAACTAGATGCCATACAGAGATTAAGTTTAGAATGCCATCCAGGTGACTAGCCTCATAGGGGACAGCTCTCTAACAACAGGTATAAACATGAATAGAATGTCTGTAGGTATCTTCCTAAGTCTGAGTGCACGTGTTTTCATCTTGGGGTGAATCCTGACCTTGGTTGTGCTGCTGTGCTCAACTGGAGGTGGAGGTTTGCTTTTGAGGCCTTCAGCCTTCTTCTTGTGTCTACAAGAAGCTTGGTGTGTCTTCACTAATGTCCCTTTTCAACCTCTAG
Seq C2 exon
GGTTTTATCCAAGCCAAAGGCTATTCTCCTTCCACGAACATTGAAGTGATCAATGACGGTGCAGAGTCAGCTATGTTCAAACAGCTCTTCCAGAGGTGGATGGAAAAGGATGAAACACAGGGGCTGGGCAAAGTCTATACTATTGGCAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005763:ENSGALT00000009258:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=FE(41.6=100)
A:
NA
C2:
PF0062617=Gelsolin=PD(33.8=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]