BtaINT0163649 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47662909-47663410:-
Coord C1 exon
chr16:47663318-47663410
Coord A exon
chr16:47662996-47663317
Coord C2 exon
chr16:47662909-47662995
Length
322 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
GACCGTGACCTGTCTTGCAGTGC
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTCTTCACGTGCTCTGTGTGCCAGGAGACGTTCCGCCGGAGGATGGAGCTGCGGGTGCACATGGTGTCCCACACGGGGGAGATGCCCTACAAG
Seq A exon
GTCAGGCTCGGCCTGTCCCCGAGGCTGGAGGCCGAGGGGCAGCCCCAGGATCTCCACCCCACCCGCCTCGCCCAGCCCTTCACGTGGGAATGGTGTCCGGGCCTCCCCTCCCTACCCGCCCAGTGCTCCTGTGTCTCTGGGCGGGATTCCATCACTGGAGGACAACCTCAGCCTCTGCCTGGGTGTGACCGTCACACTTGGTCGAGGAGCCTCCGAGCATCTCAGGCTGGGCCCTGCCTCCGATTCCCCCCCAATAGCCCTGGGGTGACCCAGCTTCCAGTGGTGTTGGTGGCTTCAGGGGTGACCGTGACCTGTCTTGCAG
Seq C2 exon
TGCTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACCTGCAGAGCCACATGATCAAGCTGCACGGAGCCCCCAAGCCCCATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735:ENSBTAT00000022249:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(62.5=48.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(29.2=24.1),PF134651=zf-H2C2_2=PU(59.3=55.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development