HsaINT0184672 @ hg38
Intron Retention
Gene
ENSG00000204859 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr1:6586695-6587291:+
Coord C1 exon
chr1:6586695-6586787
Coord A exon
chr1:6586788-6587204
Coord C2 exon
chr1:6587205-6587291
Length
417 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
ACTGTGGGCCTCTTTTTCAGTGT
3' ss Score
8.88
Exon sequences
Seq C1 exon
GTCTTCACGTGCTCTGTGTGCCAGGAGACATTCCGCCGAAGGATGGAGCTGCGGGTGCACATGGTGTCTCACACAGGGGAGATGCCCTACAAG
Seq A exon
GTCAGGCTTGGCCTGTCTCCAGGGCCAGGGTTGGGTGGCCCCAGGATCCTTCCTGCTGAGCCCTTTACGTGGGGTGCTGTCAGGCACCTCCCTCACAGTAGCTGTCAGGGAGCCTGCCTTCCCTGCCTTCCCTGCCTTTCCAGTGCCCCCTTATCTAGGCAGGGCTACTGTCTGCAGCCTCACCTCCAAGGTCCTTATTAGGCCCTTGTTTCTTTCCATGGAGGACAGGCTTGGCATCCTCTGGGCAGCTGAGCCCTGAGGGCCCTCCTTTGCACCATCCTTCACACCAGATCAGGGGTCCTCCCAGAATCATCTCACCGGGGCCTCCCTCTAGTTCCTGCCCTATAGCCCAAGGGTGGGTGGCAGGGTTTCATGGGTGCAGGCCGCCCTGGAGGTGACTGTGGGCCTCTTTTTCAG
Seq C2 exon
TGTTCCTCCTGCTCCCAGCAGTTCATGCAGAAGAAGGACTTGCAGAGCCACATGATCAAACTTCATGGAGCCCCCAAGCCCCATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204859:ENST00000377674:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(62.5=48.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(29.2=24.1),PF134651=zf-H2C2_2=PU(59.3=55.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains