GgaINT0134598 @ galGal3
Intron Retention
Gene
ENSGALG00000000637 | ZBTB48
Description
NA
Coordinates
chr21:554301-554963:-
Coord C1 exon
chr21:554871-554963
Coord A exon
chr21:554388-554870
Coord C2 exon
chr21:554301-554387
Length
483 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TCTCTTCTCCTTTATTTCAGTGC
3' ss Score
10.44
Exon sequences
Seq C1 exon
GTTTTCACGTGCTCTGTCTGCCAGGAGGTGTTTAAGAGGCGGATGGAACTGCGGCTCCACATGGTGTCACACACCGGGGAGATGCCCTATAAG
Seq A exon
GTCAGCAGTGCTCATAGGTGTTACGGCCTGGTGCTGGGGCGAGCAGGGCAGGTGTGCCGTTCTGTTCTGGGGAGCCTGGCCCTGCCCAGCAGGTGCTGTACGGGGGCTGTGTCACCACCTGGTGGCAGGAACACTCTGGTGTCTGCAGTGCATCGCTTTTGATTGCAGGCATGGCTTTTCTCCCCAGCACCTGCCTTTGCCCTTAGTGTTGCCATCACTCGGCCCCTTCCCTGTGAGCTGTCAATTGTCTCGACCAGCAGCAGAGGCATTCCCCACCTCTGAGCTGGAACAGGCTCTTGGGACACACCATAGCCAGACAGCTCTTCCCGTGGCTCTGCAGCATAGGCACTGCTGCCTTACTGGGGATTTGTCTTTGTGTCAGAACAATTCCTCTGCCAGTTGTGCAGGCATGTCACTGGTCCTTGTGTTGCAGTCACCGTTTGTGAGTTGTCTGGAAGCTGATTCTCTTCTCCTTTATTTCAG
Seq C2 exon
TGCTCCTCCTGCGTGCAGCAGTTCATGCAGAAGAAGGACCTGCAGAACCACATGATAAAGTTGCATGGCGCACCAAAGCCCCATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637:ENSGALT00000000909:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=74.2)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(59.3=55.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]