DreINT0177297 @ danRer10
Intron Retention
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25022155-25022415:-
Coord C1 exon
chr23:25022323-25022415
Coord A exon
chr23:25022242-25022322
Coord C2 exon
chr23:25022155-25022241
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
GATTTTATTTGTCATATTAGTGC
3' ss Score
4.47
Exon sequences
Seq C1 exon
GTGTTTTCATGTTCAAAATGTAGCATGACCTTTAAAAAGCGGCAAGAGCTGCGTCATCACACAGTCATGCACACAGGAGTGATGCCCAATAAG
Seq A exon
GTATGTCAGCCATAGTGAACGCAAAATGTGACCTTTTTGGAATTGGACGTTGTGCCAGTCTGATTTTATTTGTCATATTAG
Seq C2 exon
TGCACGTCGTGCCCTGAGCAGTTCATGCAGAAGAGAGACCTCAAGATCCACATGATTAAAGTCCATGGAGCTCCCAAACCACATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263:ENSDART00000144903:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(59.3=55.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGTTCAAAATGTAGCATGACCT
R:
ATGTGGTTTGGGAGCTCCATG
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]