BtaINT0163652 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016735 | ZBTB48
Description
zinc finger and BTB domain containing 48 [Source:HGNC Symbol;Acc:HGNC:4930]
Coordinates
chr16:47661799-47662172:-
Coord C1 exon
chr16:47662036-47662172
Coord A exon
chr16:47661964-47662035
Coord C2 exon
chr16:47661799-47661963
Length
72 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCCCCTCCTTGTCCCCACAGCCA
3' ss Score
12.35
Exon sequences
Seq C1 exon
GAACGAGCGGCCATACGTCTGTGAGTTCTGCAGCCACGCCTTCACCCAGAAGGCCAATCTCAACATGCACCTGCGCACGCACACGGGCGAGAAGCCCTTCCAGTGCCACCTTTGTGGCAAGACCTTCCGCACCCAAG
Seq A exon
GTGAGGCAGGCCAGCCCCTCCCTGGCTCAGGGCTGAGGCCCGGCGGCTGAGCCCCCCTCCTTGTCCCCACAG
Seq C2 exon
CCAGCCTGGACAAGCACAACCGCACCCACACCGGCGAGAGGCCCTTCAGCTGTGAGTTCTGTGAGCAGCGCTTCACAGAGAAGGGGCCCCTGCTCAGGCATGTGGCCAGCCGCCACCAGGAGGGCCGGCCCCACTTCTGCCAGATCTGCGGGAAGACCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016735:ENSBTAT00000022249:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4),PF095265=DUF2387=PU(9.2=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGAGTTCTGCAGCCAC
R:
CAGAACTCACAGCTGAAGGGC
Band lengths:
182-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development