RnoINT0167025 @ rn6
Intron Retention
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169192553-169192924:-
Coord C1 exon
chr5:169192788-169192924
Coord A exon
chr5:169192718-169192787
Coord C2 exon
chr5:169192553-169192717
Length
70 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCCACCTTGTCCCCCACAGCCA
3' ss Score
8.55
Exon sequences
Seq C1 exon
GAATGAAAGGCCGTATGTCTGTGAGTTCTGCAGCCATGCATTCACCCAGAAGGCCAACCTCAACATGCACCTGCGCACACACACAGGAGAGAAGCCCTTCCAGTGCCACCTCTGTGGGAAGACCTTCCGCACCCAAG
Seq A exon
GTGAGGCAGGCCCGTCCCCTCCTTGCCTCAGGGCTGAGACAGGTACTGAGCTCCACCTTGTCCCCCACAG
Seq C2 exon
CCAGTCTGGACAAGCACAACCGCACCCACACGGGTGAGAGGCCTTTTAGCTGTGAATTCTGTGAGCAGCGCTTCACTGAGAAGGGCCCCCTTCTGAGGCATGTGGCCAGCCGTCATCAGGAGGGCAGACCTCATTTCTGCCAGATCTGTGGCAAGACCTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595:ENSRNOT00000012745:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4),PF095265=DUF2387=PU(9.4=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGTGAGTTCTGCAGCCAT
R:
CAGCTAAAAGGCCTCTCACCC
Band lengths:
173-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]