GgaINT0134601 @ galGal3
Intron Retention
Gene
ENSGALG00000000637 | ZBTB48
Description
NA
Coordinates
chr21:552324-553053:-
Coord C1 exon
chr21:552917-553053
Coord A exon
chr21:552489-552916
Coord C2 exon
chr21:552324-552488
Length
428 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCC
5' ss Score
9.16
3' ss Seq
TCTCCCTCTGCTCACGGCAGCGA
3' ss Score
6.69
Exon sequences
Seq C1 exon
GAACGAGCGTCCCTACGTCTGTGAGTTCTGCCATCACGCCTTCACACAGAAAGCAAACCTCAACATGCACCTGCGCACACACACTGGCGAGAAGCCCTTCCAGTGCCACCTCTGCGGCAAGACTTTCAGGACACAAG
Seq A exon
GTACCCCCCTGGGCACACAGCAGTGCGTAGCTGCAGCACCCCTCCTATCCCACAGCGGCCACCTGGGAGCTGGTAGTGCTGAGCATGCTCCCCTCACAGTTATCTGCAACCTCTGAGAGGCAGCTGTGCTGAGAAACCTCTGTCTTCCCTCTAGAGCAAGTCATGCTTTTGTGCACGTGCACTTGGGAGGTGGCATTCCCTTAATTTTGTTACTTCCATAGCACAAAAAGAGGAAAACAGCGGTGCATTTTTCACAACCATAGTTAGCTCAGAGCAGCCAGCTCCTGCTTTTGCCTCTCTCTAAGCATTCATAACCAGCCTGGCACAGAGCACACATGGCCTCATCAGCTTAGCACGTGCCTGTGCCCAAAATGGGGGCACCCAGTGGACGGCTGGCCTGCAGCTCTCTCTCCCTCTGCTCACGGCAG
Seq C2 exon
CGAGTCTGGACAAACACAACCGGACCCACACCGGGGAGCGCCCCTTCAGCTGCGAGTTCTGCGAGCAGAGATTCACAGAGAAGGGGCCCCTCCTGAGGCACATCGCCAGCCGGCACCAGGAGGGGAGGCCCCACTTCTGCCAGATCTGTGGGAAGACGTTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000637:ENSGALT00000000909:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4),PF095265=DUF2387=PU(9.4=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCCTACGTCTGTGAGTTC
R:
CTTTGAACGTCTTCCCACAGA
Band lengths:
295-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]