DreINT0177300 @ danRer10
Intron Retention
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25017330-25017715:-
Coord C1 exon
chr23:25017579-25017715
Coord A exon
chr23:25017495-25017578
Coord C2 exon
chr23:25017330-25017494
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCA
5' ss Score
7.22
3' ss Seq
CTTTTGTATCGTGTGAGCAGCCA
3' ss Score
3.85
Exon sequences
Seq C1 exon
AAATGAACGCCCTTTTGTGTGTCAGCTCTGCAATCATGCTTTTACACAGAAAGCCAATCTGAGCATGCACCTAAGAACACATACAGGAGAGAAACCTTTCCAGTGCCACCTCTGCGGGAAGACATTTCGCACTCAAG
Seq A exon
GTATCAACCAAAAGACACAAACAAAAACCTTAAGCAAAACCAAATCACTGCAGTTTGTTGATTACTTTTGTATCGTGTGAGCAG
Seq C2 exon
CCAGTCTGGACAAACATCACCGCACACACACAGGAGAGCGGCCGTTCAGCTGTGAGTTCTGTGAGCAGCGCTTTACTGAGAAAGGTCCTCTCTTACGCCACATAGCCAGCAAACACCAAGAAGGTCGACCACACTTTTGCCAGATCTGCAACAAAACATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263:ENSDART00000144903:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.196
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(59.3=34.0),PF134651=zf-H2C2_2=WD(100=55.3)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=46.4),PF134651=zf-H2C2_2=WD(100=46.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGAAGACATTTCGCACTCA
R:
TCTGGCAAAAGTGTGGTCGAC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]