BtaINT0164239 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020053 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr13:34063175-34064079:-
Coord C1 exon
chr13:34063899-34064079
Coord A exon
chr13:34063774-34063898
Coord C2 exon
chr13:34063175-34063773
Length
125 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
AGCTGTGCCCTTATTTTCAGGTA
3' ss Score
9.66
Exon sequences
Seq C1 exon
GATGAAAGGCAAGACACTAGCTCAGAAGGAGTATCCAACGTAGAGGATCAGAACGACTCCGATTCCACGCCCCCCAAAAAGAAAATGCGGAAGACAGAAAACGGAATGTATGCTTGTGATTTGTGTGATAAGATATTCCAAAAGAGTAGCTCACTGTTGAGACATAAATACGAACACACAG
Seq A exon
GTATGTATATTAAGGAAGCTGCCAGTTTTGCAGAGTTGAATTGATGACTATTTCCATAACCAGAAGTGCCCCAAGGCCTAGCGGCTCCATGCCATTGTATTTCATAGCTGTGCCCTTATTTTCAG
Seq C2 exon
GTAAAAGGCCCCACGAGTGTGGCATCTGCAAAAAGGCGTTTAAACACAAGCATCACCTGATCGAGCACATGCGCCTGCACTCCGGGGAGAAGCCCTACCAGTGCGACAAGTGCGGGAAGCGCTTCTCCCACTCGGGCTCCTACTCCCAACACATGAACCACCGCTACTCCTACTGCAAGAGGGAGGCCGAGGAACGGGAGCCCCCTGAGCCGGGGGCCGCAGGCCCAGGGGTCCCGCCCGAGCAGCATGCGGGGCAGGGCGACTCGGACGAGAGGGAGAGCTCGACGCGGGAGGAGGATGAGGACAGCGAAAAGGAGGAGGAAGAGGAGGAGGAGGAGCGGGAGCTGGAGGAGCTGGAGGAGGAGAAGGGAAGTGGAGCGGCGCGAGGGGCGGAGGAGGTGGAGGAGGAGGTGGAGGACGGAGAGGAGGAGATGGACGACGAGGAGGACGAGGACGAGGAGGCGGAGGATGACGGGGAGAGAGCAGAAACGGAAGGTGTGGGGCAGGGGGCGGGGGCTGGAGGCCAGGCCCACAGCTTAGAACACAAAGTCAGTGAGGGCAGCGAGCAGGTGTCCGAAGAGAAAACAAATGAAGCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020053:ENSBTAT00000038847:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=NA C2=0.849
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=16.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=7.5),PF134651=zf-H2C2_2=WD(100=13.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGAAGACAGAAAACGGAA
R:
GGTGGTTCATGTGTTGGGAGT
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development