MmuINT0178368 @ mm9
Intron Retention
Gene
ENSMUSG00000024238 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:MGI Symbol;Acc:MGI:1344313]
Coordinates
chr18:5770382-5774909:+
Coord C1 exon
chr18:5770382-5770562
Coord A exon
chr18:5770563-5772426
Coord C2 exon
chr18:5772427-5774909
Length
1864 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
GCTGCGTTCTTACCTTGCAGGTA
3' ss Score
11.57
Exon sequences
Seq C1 exon
GATGAAAGACAAGACACTAGCTCAGAAGGAGTCTCCACTGTGGAGGACCAGAATGACTCTGACTCCACGCCACCCAAAAAGAAAACTCGGAAGACAGAGAATGGAATGTATGCATGTGACCTGTGTGACAAGATATTTCAGAAGAGCAGCTCACTGTTGAGACACAAATATGAGCACACAG
Seq A exon
GTGTGTGGGGGACCTGGGCACGAGGTTCTAAAGGTGCCTGTGGCCCAGTGCACATGAAACATGCCCATAGTGTGTGACGTTCTCAGCTCTGCTCCGTGGTCTCCACTTTTCACATATTCCTACTGCGGAGCAGTGGCTTGGCTGTCTGCTGCCTAGACTCCCGTTTCGCCTTTAATGCCTTGGTGTCTATGCTGACAGAGCACTTGCTCTGCATACCTTCATTCCTTGCATCTCAGCTTCTGCTGCACACAAGGTGCTGAAGTGTCAGGAAGAGGACTCAGCTCCAGAAAGCAGCCAGTGAGCACCAGCTCTCCTGGTGCAAGGCTTGCCTCCTGGTCACCCAAAGGTTTTAAAAGGAAAGACCTTTGCTTTGTTAGAAAGAACTTCTGCATAAGAAACTGAACTTGATTTTAAGATCACTTCAGCCCAAAGATTCTATAATTCTCCCCAAAATACACAGGCCTTAGGCTGATCTAGGACCAACAAACAATGTCTTGCAAACCAAACAAGGCTTCACTTAGCTCTCTGATGCTTATGAGCCGAGACTAGACTTTTACATTTTTTGTGATTGAAAAGGATTTTTTTAAAGATAAAAGTCAAACTTTGGCATCCTAAATGATGTTTTATTCTGCCCAGTCATCCCTCACTTGCCTGTTGCTGATTACAGTGGGGATAAAGGCCAGCTGGTCCCAAGACACTTTACTAGTGAGGGCTTTTACGAAAGATGTTTGCTGATGTGCCCCTCCCAATTCCCTCTCTCCATAGCCATGCTGGTCTATTCTAATTTGTGTGTCTTTATGGCCTGGGAAGTCCAGATAAGAAGTATGTACCAACCCCTGTCCATGACTGACCTCAAGCCTGAACAGCTTTCAAACAACTCCAGAATTCCCATAGTTTAGCAACAGGCTCCTAGCTGATAAGAGCTGCATAGCCAACCAGTTTCTCTCCAACAAGATGGCTAGATGAAAGACTGGTTTCATCGTAACTAATCCCCAGGATCTTTTCCCTGGCCCTTACCAGCCACTTACCTACAGTTGAAGTAGCAACACACAGACCCTCAGCCTCTCACCAACAATGGTAACTCATTCCCCTGGTGAGAAGACACGCAGAGAAGCGGGACACTTGGGTGGCTGCTGAGGTTGAAAGCTGTACCTCTCTAATAAAAGCTTGGGACCACAGCCCTCTACTTATATTCACTGAGATAATTAGGAAATCTCCTAATTCTTTAAAAAGAGTTAAATACTGGTAATATCAAAATTAAAATGACATCCTAGCTGTAAAAAAATTTTCAAAAGTAATTTCTGGATTTTTAAGTGTTGACTGGCTCATAGCACTGTAGTTGGTAATAGCCAGTCCTGATTATGCCAGCTGTCCTCTGTGTATCCACTGTTGCTCAGGCCACACCCACTCATGAGGGGCAAGATTGCAGCCTTGTGGGGCAAAAGCTATTTTAGATGTTATAAAGAATTTCCACATCAGCTCTACATTTGTGAAAATTTGCCCATAAGTAGAAAGAGCTGTGAGACATCAAAATGCCGTGGAAGCCCCTCTTCCTGAGATTGTCACCCTGGCTCATGGGAGCCTCACTTATAAATGTTCTGCCATGTGGTCCTGATGTATGAATTTTTGGCATTTCCACCTTTTATAATTAGCACTGGCCTCATCTGCAAAGCAGTGTATAACCTTGAATTTTCACATAGAAAAAAATGAACCATAGTATTATCGTACAATTGGGAACCTGCCAGTTTCTTGACCATGGAACTGTGACCCTCCCCTTGCACAATCTGAATGTCCCTTCATTCTCCCAAGCACTCTGTTTATTTCTGCCAGTGTTCTGTTTCATAGCTGCGTTCTTACCTTGCAG
Seq C2 exon
GTAAGAGGCCTCACGAGTGTGGAATCTGTAGAAAGGCATTTAAACACAAGCATCATTTGATTGAGCACATGCGGCTGCACTCTGGGGAAAAGCCCTATCAATGTGACAAGTGTGGCAAGCGCTTCTCACACTCCGGCTCCTACTCTCAACACATGAATCACCGCTACTCCTACTGCAAGAGAGGAGCTGAAGACAGAGATGCTATGGAGCAGGAAGACGCTGGGCCCGAAGTCCTGCCGGAAGTCCTGGCGACTGAGCATGTTGGTGCCCGGGCGTCTCCCTCACAGGCTGACTCGGACGAGAGAGAAAGTCTGACAAGGGAAGAAGATGAAGACAGTGAAAAGGAGGAGGAGGAGGAAGATAAAGAGATGGAAGAATTACAGGAAGGAAAGGAATGTGAGAACCCACAGGGGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGAAGAGGAGGAAGAGGAGGAAGTGGAAGCGGATGAAGCCGAGCATGAGGCAGCAGCCAAGACTGATGGTACAGTGGAGGTTGGAGCTGCACAGCAGGCAGGCAGCTTAGAGCAGAAGGCCAGCGAGAGCGAGATGGAGAGCGAAAGCGAGAGTGAGCAGCTGTCTGAAGAGAAGACAAATGAAGCTTAGGAGTTCTTCTAAAAGGAAATTCTACTTGGTAATGAAATTTGCTCTATATTACCCACGCTTTTCATGGAAACATGGCTCCATGGCTCCTGTGCTATGGTTCCTGCTCACTACTGTGTAATGTCAGAACTGAAAAAAAAAAAATTCCGGGTGTGCCTGAACCTCAAACCTAGTAATTTTTCATGCAGTTTTCAAAGTTAGGAACAAATTTATAACATGAAGCAGCTTAGAAAACATTAATGACTCAGAAAACAAAGGTTTCTCAGCAGGTTACAGGAGGCTGGATGGGCGTCCGGCATGGCTAGCAGTATTATCACTCTTACGTTGGCTCATTCTTAAGCTCTACAATGGGAGAAATTTTATAATTTTTTTATTGGTAAACATATGCTAAATCCGCTTCAGTATTTTATTATGTTTTTTAAAATGTGAGAACTTCTGCACTACAGAATTCCCTTCACAGAGCAGTAGAAAGCAGTTCAAACCGTGCTGGCTACCTGCTGCTACCCAGTCAGTCAGGAGATAGGACCTCTGACGTTAGATGCCGTGTTGCCATCTAACATGTATTGCTAGCCTTAAGGAAGCAGCCAGAGAAGAGCTGGAGTTTCTTACTCGTGTGATTTTTAAATGGAGTTCAAAGGTTGTCGTTGAGTCCTGACTCCAGGGACGACCAGTGTTGATGTGGCAAGGCCGGCAGAGGCGGCAGAATCAGTGTTCGTGATTGTTTGCGTACGTTAGCAACCATGAAGGATCTATAGGAAGCAAGCGCTGTGTCCCTTTGGCCTTAAGCAAGACCTGTGCTCTAAGTGCCATTCTCAGTATTGCAAGGCTCTGACAGCCTTCCCGCAGTGTGGCCTATATTAACTAGCAGTTGTTGATTCGTTTGTTGTGTCAAAATTCCCAAACAAAACTCAAAACCACTGACTGTGAGAGAAGCTGAAGCACTGGGGCATCTCACACTTTTGTTCCTCAGTAGTCATTTCATGTTGATTGACTCTCAGAAGTCTCTACAGAAATAAAAGGGAAATTCTCCAAACTACTTAATCCATGTACTTGCGTGTCAGGCATGGATACGCTATTGGTTTTTGGTTCACAGCCGTTTTCCAAATGTTAGTTATTACGGACCCAGGTGATGAACAACAGCAGCTGATTTTTACCTACCAGTATTATTTTATTTCTTTTAGTTTATAGATCTGTGCAACATTTTTGTACTGTATGTCTTTAAGCCTGGCAGTATTAATACCCTTCTTACTGACACGTACTTTTAGTTTTAGAAAACTTTTATATTTATGTGTCTTATTTTTATATTTCTTTATTTATTACACAGTGTAGTGTATAATACTGTAGTTTGTATTAATACAATAATATATTTTAGTATGAAATTTTGGAAAGTTGCTAAGATTTACAGTAGAGATGCAGTTGGTTCCCGTGCGTTGAGATTTGATTTAACAGTGTTCTGTTAACATTTATACTTGCCTCCGACTGTAGACCAGCCTTTAAATGGGAAGGTATTAGTTTTACAACTACAATCAAGTCATTCTCCCTTTCCCCAGTTTTTAATAGGAAACTCTTACACTTTGACACTCACTGTGTGCGACTCATAGCATGCCGCTCTGCAGTCTTCTGTTAAGAGTTGGCCCAGCCATAACTCATTCCCTTAGCAAGCCAAATTAGAATTGCCTTCTGTAAACAGTGTTGGGAACAATGTTTAACATGTGCCAATTTGTTCCTGTATCCATGTATGTAAGCTACCAATCTGACTCTTCCTTTTAAGTTCCTTGTTACACCATGGTCATTTTCTAGTTTTTTACCAGACTCCCCAGCTCACAATAAACGCATCAACAAACCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024238-Zeb1:NM_011546:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=NA C2=0.811
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=16.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=7.0),PF134651=zf-H2C2_2=WD(100=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGACTCTGACTCCACGCC
R:
CAGCGTCTTCCTGCTCCATAG
Band lengths:
353-2217
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: