RnoINT0167567 @ rn6
Intron Retention
Gene
ENSRNOG00000017863 | Zeb1
Description
zinc finger E-box binding homeobox 1 [Source:RGD Symbol;Acc:3831]
Coordinates
chr17:54658463-54660896:-
Coord C1 exon
chr17:54660719-54660896
Coord A exon
chr17:54659080-54660718
Coord C2 exon
chr17:54658463-54659079
Length
1639 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
GCTGCGTTCTTACCTTGCAGGTA
3' ss Score
11.57
Exon sequences
Seq C1 exon
GATGAAAGACAAGACACTAGCTCAGAAGGAGTCTCCGTGGAGGACCAGAATGACTCTGACTGCACGCCACCCAAAAAGAAAACTCGGAAGGCAGAGAATGGGATGTACGCATGTGACCTGTGTGACAAGATATTTCAGAAGAGCAGCTCCCTGCTGAGACACAAATATGAGCATACAG
Seq A exon
GTGCGTGGGGGACACAGGCACAAGGTTCTGAAGCCGCCTGTGGCCCAGGGCACAGGAAACCTTCCTGTGGCATCTGAGGCTCTCAGCTCTGCTCCTTGGTCTTCACTTCACAAGTGGTGCAAGGCTGGCCTCTTGGTCACCTAAGGGTTTTTAAAAGAAAGAACTTCTGCATAAGAAACTGAACTTGATTTTAAGAACACTTCAGTCCTTAGGTTGACCTAGGACCTACAAACAATGTCTTGCAGACCAAACAAGGCTCCACTTATCTCTCTGATGCTTGTGAGCCAAGAATAGACTTTTACATTTTTTGTGATTGAAATTTTTTTTTTTTTTAAAGATGAAAATCAAACTTTGGCATTCTAGATGATGTTTTATTCCACCCAGAGATCCCTCACTTGCCTGGTGCCGAAAGCTGTTGTTTCTACTCATACCAATGATAGATTTGAATGATTGCAGTGGGGACAGAGGGCAGCCGGTCCCAAGATGCTTGCTTCACCAGGGAGGGCTTTTACAGAAGGTGCTTGCTGGCCTGCCCCTCCCAATTCCCTCTCTCCAGAGCCATGCTGGTCTATTTTAGTAAGTGTGTCTCTGCAGCCTGGGAAGTCCAGATAGGAAGCAGGCCCCTGTGGTCTGAGAACTCCCTCCACGACTGGCCTCAAGCCTCAATAGCTTTTGGACAACTCCAGAATGTCCATAGTTTAGCACCAGGCTCCTAGCAGTAAGAGCTGCACAGCCAACAAGATGGCTAGATGAAAGGCTCATTTCATTGTAACTAACCCCAAGTGATTGCCTTACCAGTCACTTCAGCTGCAGCTGCAGGACCCAGGCACATACACACCGTCAGCCTCTTACCAACCATGGTAACTCATTCCCTCTGGTGACAAGACACAAGAGAAGTGTTCATCACACTCTGCAGTGTGACACTTGCACTGTTGTTGGGGTTGAAAGCTGTACCTCTCTAACAAAAGCTCAGGACCATGCCCTCTACTTGTATTTACTGAGAAAATTAGAAAATCTCCTAATTCTTTAAAAAGAGTTAAATACCAGTAATATCAAAATTAAAATGACATCCTAGCTGTAAAAAGAGATGTCAAAAGTCCTTTCTGGATTTTAAGTGCTTATGCTGTACTTAGAAGTCACCAGTCCTGGTTATGCCTGCTGCCGTGGTATGTCTCCTGTGCTGCTCAGGCCACACCCACTTATCAGGGACAAGATCGCCCTGCGGGGCAAAAGCTGGTTTAGATATCATAACAGCTTCTACATAAACTCTACATGTGTGTTAGTTTGCTCATACGTAAAAAGATCCGTGAGACATCAAATGCCATAGAACTCCTCTTCCTGAGACCATTGCTGTGCACATGGGGGCCTCAATGGCCGACATTTTGCCATGTGGTCCTGATGTGTGGACTTTTGGCTTTTCAGCCTTATGCAGTTAGCACTGACCTCATCTGCAAAGCACTGTGTAGCCTTGAATTTTCACATAGAAAAGATGAACCATAAGTATAGTTGGGGACCTGCCAGTTTCTTGAGCATGGAACTATAGCCCTTCGCTTTCATAGTCTTAATGTCCCCTCACATCCCAAGCACTCTGTTTACTTCTGCCAGTATTCAGTTTCATAGCTGCGTTCTTACCTTGCAG
Seq C2 exon
GTAAGAGGCCCCACGAGTGCGGAATCTGTAGAAAGGCATTTAAACACAAGCATCATTTGATTGAGCACATGCGACTGCACTCTGGGGAAAAGCCCTACCAATGTGACAAGTGTGGCAAGCGCTTCTCACACTCGGGGTCTTACTCTCAACACATGAATCACCGCTACTCCTACTGCAAGAGAGGAGCTGAAGACAGAGATGCCATGGAGCAGGAAGACACTGGGCCGGAAGCCCTGCCGGAAGTCCTGCCCACTGAGCTTGTTGGTGCCCGGGCATCTCCCTCACAGGCTGACTCGGACGAGAGAGAAAGTTTGACAAGGGAAGAGGATGAAGACAGTGAAAAGGAGGAGGAGGAGGAGGATAAAGAGATGGAAGAATTGCAGGAAGACAAGGAATGTGAGAACCCACAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGAAGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGCAGAGGAAGCTGAGCATGAGGCGGCAGCAGCCAAGACTGGGGGTGCAGTGGAGGAGGAAGCGGCTCAGCAGGCAGGCAGCTTCCAGCAGAAGGCCAGCGGGAGCGAGAGCAAGCGACTGTCTGAAGAGAAGACAAATGAAGCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017863:ENSRNOT00000024336:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.567 A=NA C2=0.795
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=16.7)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=7.3),PF134651=zf-H2C2_2=WD(100=12.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATGACTCTGACTGCACGC
R:
GTCTTCCTGCTCCATGGCATC
Band lengths:
350-1989
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]