HsaINT0185323 @ hg38
Intron Retention
Gene
ENSG00000148516 | ZEB1
Description
zinc finger E-box binding homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11642]
Coordinates
chr10:31523933-31529814:+
Coord C1 exon
chr10:31523933-31524113
Coord A exon
chr10:31524114-31526671
Coord C2 exon
chr10:31526672-31529814
Length
2558 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ACAGAATTCTTATTTTGCAGGTA
3' ss Score
7.62
Exon sequences
Seq C1 exon
GATGAAAGACAAGATACTAGCTCAGAAGGAGTATCAAATGTAGAGGATCAGAATGACTCTGATTCTACACCGCCCAAAAAGAAAATGCGGAAGACAGAAAATGGAATGTATGCTTGTGATTTGTGTGACAAGATATTCCAAAAGAGTAGTTCATTATTGAGACATAAATATGAACACACAG
Seq A exon
GTATGTCAGTGAACACAAACATAAAGTGTCCATGATATGATATACTGGAAGATGCAAAATTAAAAACTAAAGTTTTAGAATTTTCTTTCTTTTTTTTTTTTTTTATTTTGTTTTGAGACAAGGTCTGGCTCTAGTCACCCAGGCTGGAGTGCAGTGGCACGCAATCTCAATCTCGGCTCACTGCAACCTCCGCCTCCCGGGCTCAAGCCATCCTTTCATCTCAGCCTCCTGAGTAGCTGGGACTATAGGCACATACCACCACACCTGGCCAATTTTGATATAGACGGGTTTTGCCATGTTGCCCAGGCTGGTCTTGAACTAATGAGCTCGAGCCATCTACCCACCTCGGCCTCCCAAAGTGCTGGTATTACAGGCATGAGCCACCACGCTTGACCCAGAATTAATTTTCTTATTTTTTACTTATCTGATCTGGCCATTTTCACCTGTTTGCCCACTTCTACCTAGTACTTAAGGTCTGTGCCTTTCTTTTGGTTTTTTGCTTCATCTGTTTTTTTGTTTTTTTCATGACTTATTTCCTTTAAGCTGACACAGCATTTATTCTGTCCGCATTCATTTAATGCAAGCTTATGCTATATTAATAAAAACATAGTACATAGTACCCATTAATAAAAAATATGAGACCAGTGGGCTAAAGTCATAGGGAGACAGGATCTGGCTTCATAAAAGAAAAAGCTGCTTCATAAGCATGCGGCAAGCTGTCCTGGCAAGTCAAGATCTTTTGTTTTAAGTAAGAAGTTCTGCCTAAGAGGTTGGACTAGAAGATTCTAAGATCCTGTAATTCTGAGATCCTGTAATTCTGCCACAAAATATGCCTCCTTAGGTTGACTCAGGGATGGCAAACTATAGCTCACAGGCCAAATGTGAGCATACGCATGTTTTTCTATGAGGTAAGAATGGTAGTTTTTGATTTTGTTTTTACATTTTTAAATGATTGGAAAAGATGAAAAGAATATTTATGACTGATGAAAATTATGTGAAAGTCAAATATCAGCATCCGTAAATAAAATTAGTTGGAAGACAGCATCGCCTATTCATTTACATTTTGTCTATGTCAGCTTTCATGCTGTTCTACAATGGCAGGATTGAGAAGCTACTACAGAGACCATTTGGCCTGCAAAGCCTTTAATACTCACTACCCTTTACAGAAAATAGTTGCCAACTCCTGGCCTATTTCATTCCTTCCATCAGTGAAGTACTGATAAATTTTAACACCTGGTTCTCTGAAGGGTGGGGAAGCCCTGATTTGTAGTGTTTGCAGCTTTTTGTGGCATAAATACTCCCATCATGGTGGATTTCGAGCTTGAATGTGATGTCAGCTTGCAGAATTCCTGAAAATTTAGCAGTAGACTCTCTCCAGCCAGTACAAACTGGCTCCAGCACACTCCTGTGTCTCTCTCTAACATGGGTTGCTGTAGAAGGGGCTGGGTTTATCCTGAGCTCTTTAATCCCCTACCTGCTCTTCCCTGCCCCCACTACCAGCCATTATGACTACAGTATCCATATTTATCTTTCATATTCTTAACTGTTTCAGTGTATTTTTTACTCTTGTGAGAAAAGATAGAATTGTTTTTCCTTCTTCAATCTGTGGATTCATACAGTGACACTTGGAAGGTTCTTGGAGCTAAAAACTGGTTACATAAGAGAAAGTCACACCTCTCAAAATCAGCCCCTTGTAACTCAGTCCTCTGGTTTTCAGAGATCTAAGAAGAGTTAGAAAATCCCCTTCCTCTTCAGGCAAAGTTAAATATTAGCAAATATCAAAGTGAAAAATATATATGAAAAACTACACTATTTCTAAAATTAAAAATCATTTCTGCATTTGTTAGTGTTAACTGCTTGATAGCTCTGAAATTGGACATTATCGATCCTGACTATGATCAGTTGTTGCCAGTCCTTTTCATGTCTGGGCAGCAACACTCCTGTAGCCCATGCGTTCTCAGGAGGGGCAATATTGCCCTCACGGGCCAAAACTTGTTTCTTAGGGGGCAAAAAAGTCTGAGATACTACAATGGCTGTGGTTTTCTAAAGAAGCTCAGTATATATACTGTATATTTATGAGTTTTATCGTATATAAAAAGTGTATAGTAAACATTAAAATTTCACTGGGAGCAGAGCTTGTGACTAGGAAAACAAAATGACTAAAAAGGGACCTTGTAGTGATAATGAACACAAGGTGAGCAGCAAGTCTGTCCCTGTCTGCCCTCACTGTGCTCGTTCACTACCAGACATCTCCTCCCAGCTGCACTTGGCCCATTTTCCACCTCGCTGTCATGATGCTTGTATTTTTGGCATTTCAATGTCATGTAGCTCCCATTGACCTAATCATCTGCACAGCAGAGTGTAGAGCACTACGTTTTTTAATGTAAAGAACAAACCAAATTGCAATATTATATTACAAAGAGTTTGGGACCTGGAAATGTTTTAAAAATGAAACTAATAACCCTCCCCTTTCTACAACATGAAGTACCCCAAAAACCGTATAAGGATTTTATTTGCTGAATACCACCATTTTATTTAACAGAATTCTTATTTTGCAG
Seq C2 exon
GTAAAAGACCTCATGAGTGTGGAATCTGTAAAAAGGCATTTAAACACAAACATCATTTGATTGAACACATGCGATTACATTCTGGAGAAAAGCCCTATCAATGTGACAAATGTGGAAAGCGCTTCTCACACTCTGGGTCTTATTCTCAACACATGAATCATCGCTACTCCTACTGTAAGAGAGAAGCGGAAGAACGTGACAGCACAGAGCAGGAAGAGGCAGGGCCTGAAATCCTCTCGAATGAGCACGTGGGTGCCAGGGCGTCTCCCTCACAGGGCGACTCGGACGAGAGAGAGAGTTTGACAAGGGAAGAGGATGAAGACAGTGAAAAAGAGGAAGAGGAGGAGGATAAAGAGATGGAAGAATTGCAGGAAGAAAAAGAATGTGAAAAACCACAAGGGGATGAGGAAGAGGAGGAGGAGGAGGAAGAAGTGGAAGAAGAAGAGGTAGAAGAGGCAGAGAATGAGGGAGAAGAAGCAAAAACTGAAGGTCTGATGAAGGATGACAGGGCTGAAAGTCAAGCAAGCAGCTTAGGACAAAAAGTAGGCGAGAGTAGTGAGCAAGTGTCTGAAGAAAAGACAAATGAAGCCTAATCGTTTTTCTAGAAGGAAAATAAATTCTAATTGATAATGAATTTCGTTCAATATTATCCTTGCTTTTCATGGAAACACAGTAACCTGTATGCTGTGATTCCTGTTCACTACTGTGTAAAGTAAAAACTAAAAAAATACAAAATACAAAACACACACACACACACACACACACACACACACACACACACAAAATAAATCCGGGTGTGCCTGAACCTCAGACCTAGTAATTTTTCATGCAGTTTTCAAAGTTAGGAACAAGTTTGTAACATGCAGCAGATTAGAAAACCTTAATGACTCAGAGAGCAACAATACAAGAGGTTAAAGGAAGCTGATTAATTAGATATGCATCTGGCATTGTTTTATCTTATCAGTATTATCACTCTTATGTTGGTTTATTCTTAAGCTGTACAATTGGGAGAAATTTTATAATTTTTTATTGGTAAACATATGCTAAATCCGCTTCAGTATTTTATTATGTTTTTTAAAATGTGAGAACTTCTGCACTACAAAATTCCCTTCACAGAGAAGTATAATGTAGTTCCAACCCGTGCTAACTACCTTTTATAAATTCAGTCTAGAAGGTAGTAATTTCTAATATTTAGATGTCTTAGTAGAGCGTATTATCATTTAAAGTGTATTGTTAGCCTTAAGAAAGCAGCTGATAGAAGAACTGAAGTTTCTTACTCACGTGGTTTAAAATGGAGTTCAAAAGATTGCCATTGAGTTCTGATTGCAGGGACTAACAATGTTAATCTGATAAGGACAGCAAAATCATCAGAATCAGTGTTTGTGATTGTGTTTGAATATGTGGTAACATATGAAGGATATGACATGAAGCTTTGTATCTCCTTTGGCCTTAAGCAAGACCTGTGTGCTGTAAGTGCCATTTCTCAGTATTTTCAAGGCTCTAACCCGCCTTCATCCAATGTGTGGCCTACAATAACTAGCATTTGTTGATTTGTCTCTTGTATCAAAATTCCCAAATAAAACTTAAAACCACTGACTCTGTCAGAGAAACTGAAACACTGGGACATTTCATCCTTCAATTCCTCGGTATTGATTTTATGTTGATTGATTTTCAGAATTTCTCTACAGAAACGAAAGGGAAATTTTCTAATCTGCTTTATCCATGTACTTGCATTTCAGACATGGACATGCTATTGTTATTTGGCTCATAACTGTTTCCAAATGTTAGTTATTATGGACCCAATTTATTAACAACATTAGCTGATTTTTACCTATCAGTATTATTTTATTTCTTTTAGTTTATAGATCTGTGCAACATTTTTGTACTGTATGTCTTCAAACCTGGCAGTATTAATACCCTTCTTACTGACATATGTACTTTTAGTTTTAGAAAACTTTTATATTTATGTGTCTTATTTTTATATTTCTTTATTTATTACACAGTGTAGTGTATAATACTGTAGTTTGTATTAATACAATAATATATTTTAGTATGAAAATTTGGAAAGTTGATAAGATTTAAAGTAGAGATGCAATTGGTTCTCCTGCATTGAGATTTGATTTAACAGTGTTATGTTAACATTTATACTTGCCTTGGACTGTAGAACAGAACTTAAATGGGAATGTATTAGTTTTACAACTACAATCAAGTCATTTTACCTTTACCCAGTTTTTAATATAAAACTTAAATTTTGAAATTCACTGTGTGACTAATAGCATGATGCTCTGCAGTTTTATTAAGAAATCAGCCTAACCATACAACTCTCATTTCCTTAGTAAGCCAAATTAGGATTAACTTCTATAAACAGTGTTGGGAACAATGTTTAACATTTTGTGCCAATTTGTTCCTGTATTCATGTATGTAAGTTACAGATCTGACTCTTCATTTTTAAGTTCCTTGTTACATCATGGTCATTTTCTAGTTTTTTACCAGACTCCCATCTCACAATAAAATGCATCAACAAGCCTGAACTGCTGTCATTCTTTTCATCATTATCAGTATTTTCTTTGGAAAACTGTGAAATGGGGTACATTGTCATCCTGCATTTGATTCATCTTGAGCTGAATTTGGGTAACACTAAATGTTTTAGACATTCTCCACTAAATTATGGATTTTCTTGTGGCTAAATGTTTCTGGAGAGGTCAGAGTTGACAAAACCTCTTCACAGGTTGCTCCTTCTTCCTGAAATCCTTAATCCTCCGCATTTCATGCTTCAGGTCATTTCAGGGAAGCCTGGGTTTAGATGCCTTTCTGACTCTCAGCTCCTGCACTTCTGTCATCATACCTCTGATACTATTATTTATATTCCTTCCCCACTAGGAACAGGAACCACATTTGTCATAGTCACTCTCACATTCCTCACTGCCTAACAGGGTGCCTGGCATAAGTTGGGACAACAGATATTTGTTGAATAAAAATATAATTTGCATGTTTATGGAGCTCAGCTATGTTCTCACTTTTTTTGCTTCTAATTCCAGAATATATGTTAAATGATCTAATAATTTGATTATTTTCTTATAAGTCTTATTAAACACTAGTCATAATAGACACAATAAATTATGCCTTCTTTTTCTATTGCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148516:ENST00000437844:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.623 A=NA C2=0.817
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=16.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=7.6),PF134651=zf-H2C2_2=WD(100=13.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains