BtaINT0164310 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017731 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr14:8213893-8216399:+
Coord C1 exon
chr14:8213893-8215343
Coord A exon
chr14:8215344-8216166
Coord C2 exon
chr14:8216167-8216399
Length
823 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ATGTGAAAATATTTTTTTAGGCA
3' ss Score
5.78
Exon sequences
Seq C1 exon
GCTCGGGCCCACCCAGCTCAAGATCTTCACCTGTGAGTACTGCAACAAGGTCTTCAAGTTCAAGCACTCACTGCAGGCCCACCTGCGGATCCACACCAAGGAGAAGCCCTACAAGTGCTCCCAGTGCAGCTACGCCAGCGCCATCAAGGCCAACCTCAACGTGCACCTGCGCAAGCACACGGGCGAGAAGTTCGCGTGCGACTGCTGCTCCTTCACCTGCCTGAGCAAGGGCCACCTCAAGGTGCACGTGGAGCGCGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAGTACTCGGACGTCAAGAACCTCATCAAGCATATCCGCGACGCGCACGACCCGCAGGATAAGCCGGTGCAGGAGGCCCTGGATGAGCTGTGCCTGATGACGAGGGAGGGCAAACGGCAGCTGCTCTACGACTGCCACATCTGTGAGCGCAAGTTCAAGAACGAGCTGGACCGCGACCGCCACATGCTGGTCCACGGTGATAAGTGGCCCTTCGCCTGCGAGCTCTGTGGCCATGGCGCCACCAAGTACCAGGCGCTGGAGCTGCACGTCCGGAAGCACCCGTTCGTGTACGTGTGCGCCCTGTGCCCCAAGAAGTTCGTCAGCTCCATCCGCCTGCGTGCGCACATCAAGGAGGCTCACGGGGCCGCCCAGGAGACTCTCGTCTTCACCAGCTCCATCAACCAAAGCTTCTGCCTCCTGGAGCCCGGCGGGGACATCCAGCAGGAGGCCCTGGGTGGGCAGCTGCAACTGGCAGAAGAGGAGTTCGTGTTCCAGGGGGTAAACGTGCCCAAGGAGGCAGCCAGCCCCGGACAGGCACGGCCCGCAGTGGAGCCCAGGGCCCCTGCAGAGGTGCCCGCCTCGCCGGTGCGCTTGGCTGCTGCCCAGCCCAATGGCACCGCCCCGGCCCCTCCACCCAGTGAGCTGGCAGCCTCCGCCATGTCCCCGGACCTCCGTCCGCACGCGGGGCTTTCCAGTGAGTTCTTGATGAAGAGCGATCCCCCCACAGCTGAGGCTCCCGCTGCTACTCCCGAGAAGACCGGTGACACCCAGCAGGGAGGCGCTGCCCCGATTCAGGGCCAGGACGTGGCACCTCTGCTGTCCAAGGCCAAAGGCATGGAAGCAAACTCCGAGGCTCCGGGCGCCAAGAGCCCTCCAGCCGAGGGGCAGAAAGTGGCAGCCTTCTCATGCGATGGCCCAGATCCCAGCAGAGGCCTCAGGTCCAACCCAGCTCAGGCCTCAGACCCTCCCCCGGGAGCTGGTGGGAGGGAGGCGGCCCTGTGCCAGCCTGCCTCTTGCACGCCCGCCCCCGAGCACCGGGCCGGTCTCACTGCCTTCATGAAGATCCTGGACAGTTTGCAGAAGAGGCGGATGAACACCGGCCTGTGTGAGAGGATCCGGAAGGTGTACGGGGACCTGGAGTGTGAATACTGTG
Seq A exon
GTAAGGGGTGGGGCCGGGCACGAGGCTGGGGGGCTGTCTTCCCCGCAGCCCATCCGGCCACCTGGCTGCGGGTCCACCTCCTGTTTGAGTTGAGCTCGTGTCTCTTTGCAAAGAACACCTTCTAAGTGAGCTCGCCGTCCTGGGTAGATAGCAATGGCGCCACCATGGTGCAGTAGCCTGTGAAGTCTGTGAAGGCAGCTAGGATGCTGGGACAGCCAAACCCGCTGGCTTGGCCAGGCCTGCGAGGCGGAGGTTTATCCTATGGCCCCCGCCTGAGCTTTAGCCAAGAGGTACCTTTCTTCTGTCGCATGAGAAGTTTAAAAGTCCAGCTTTAGTAAGTTGTGGCCGTTGCCTAGGTGGGCAGAGAGATGTTAACGGGAGTGACTGCAGCTCTTTGTAGGGAGACGCTGAGTGCATCCCTCGCAGCTCGCGGTGGAAGCCTGGCCTTGGGGTCTCCTGAGAGCGGGCAGGACCCATGGGAGATGGCCCAGGTGCCCGCGGAGCTTAGAGCCTGGTGATGTCACCCATGTGCGTAAACATACGTGGTACCATAACTGGTCCTCGGTAAGCGCTCCTTTACTCCTCCCAGCACTGATGTCATGCAGAAGGAGTAGCAGCACCCTTAATTTTTGCCACCTGCCACCTTTGAAAAGTCATTTCCAGACAGAGATGTGGTGCAAAGTGTGAAGGGTGACCCGGACAAGCACGAGAGGGAAAGGAAGATAGTTCTTAAAAAATAAAATAATACTAATACTAATTAAAAAAAAGATCAAATTCAGGATAAAAGAAACTTCCTTGTTCTCATGTGAAAATATTTTTTTAG
Seq C2 exon
GCAAACTTTTTTGGTACCAAGTGCATTTTGACATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCCCAGTGTCACTATTCTTCCATCACCAAAAACTGCCTTAAACGCCATGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGTCCCACTGACGGCTGTGACTACTCGACTCCAGATAAATATAAGCTGCAGGCACATCTTAAAGTCCACACTGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017731:ENSBTAT00000023578:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF127562=zf-C2H2_2=WD(100=15.9),PF0009621=zf-C2H2=WD(100=4.9)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(39.3=14.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTGGCAGCCTTCTCATGC
R:
AGAATAGTGACACTGGGAGCA
Band lengths:
357-1180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development