HsaINT1047183 @ hg38
Intron Retention
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr8:134600436-134602933:-
Coord C1 exon
chr8:134601477-134602933
Coord A exon
chr8:134600669-134601476
Coord C2 exon
chr8:134600436-134600668
Length
808 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ATGTGAAAATATTTTTTTAGGCA
3' ss Score
5.78
Exon sequences
Seq C1 exon
GCTAGGTCCCACTCAGCTCAAAATCTTCACTTGTGAATACTGCAACAAGGTCTTCAAGTTCAAGCACTCGCTGCAGGCCCACCTGAGGATCCACACCAATGAAAAGCCATACAAGTGCCCCCAGTGCAGCTATGCCAGTGCCATCAAGGCCAACCTCAATGTGCACCTGCGCAAGCACACTGGAGAGAAGTTCGCCTGCGACTATTGCTCGTTCACCTGCCTGAGCAAGGGCCACCTCAAGGTGCACATCGAGCGAGTGCACAAGAAGATCAAGCAGCACTGCCGCTTCTGCAAGAAGAAGTACTCTGACGTCAAGAACCTCATCAAGCACATCCGAGACGCGCATGACCCACAGGACAAGAAGGTCAAAGAGGCCTTGGACGAGCTCTGCCTGATGACGAGGGAGGGCAAGCGGCAGCTGCTCTATGACTGCCACATCTGTGAGCGCAAGTTCAAGAACGAGCTGGACCGTGACCGCCATATGCTGGTCCACGGAGACAAGTGGCCTTTTGCCTGTGAGCTCTGTGGCCATGGGGCCACCAAGTACCAGGCGCTGGAACTGCATGTCAGGAAGCACCCCTTCGTGTACGTCTGTGCCGTCTGCCGCAAGAAGTTCGTCAGCTCCATCAGGCTGCGCACCCACATCAAAGAGGTGCACGGGGCTGCCCAGGAGGCCTTGGTCTTCACCAGTTCCATCAACCAGAGCTTCTGCCTCCTGGAACCTGGTGGGGACATCCAGCAAGAAGCTCTGGGGGACCAGCTACAGCTGGTGGAAGAGGAGTTTGCCCTCCAGGGCGTGAATGCACTCAAGGAAGAGGCCTGTCCTGGGGACACTCAGCTGGAGGAGGGCCGGAAGGAGCCGGAGGCCCCTGGGGAAATGCCTGCCCCAGCTGTGCACCTGGCCTCCCCGCAGGCCGAAAGCACAGCCCTGCCACCCTGTGAGCTGGAAACCACCGTGGTCTCCTCCTCAGACCTGCATTCTCAAGAGGTGGTTTCAGATGATTTTTTGTTGAAAAATGATACCTCCTCCGCAGAGGCTCATGCTGCTCCTGAGAAGCCCCCAGACATGCAGCACAGAAGCTCAGTCCAGACGCAAGGTGAAGTGATCACACTACTGCTGTCCAAGGCCCAGAGTGCTGGGTCAGATCAGGAAAGCCATGGCGCCCAGAGCCCCCTAGGGGAAGGGCAGAACATGGCTGTGCTTTCAGCTGGTGACCCAGATCCCAGCAGGTGTCTCAGGTCAAACCCAGCTGAGGCCTCAGACCTCCTCCCTCCAGTAGCTGGTGGTGGGGACACCATCACACATCAGCCTGACTCTTGCAAAGCTGCCCCTGAGCACCGGTCAGGCATCACCGCTTTCATGAAGGTCCTGAACAGTTTACAGAAGAAGCAAATGAACACCAGCTTGTGTGAGCGGATCCGGAAGGTTTATGGAGACCTGGAGTGTGAATACTGTG
Seq A exon
GTAAGGAAAGGCAGCGCCGGTGCGTGGCCCTGTCCACAACCATCATGCTGTGGTCACCTCGCATTTGATTTGAGCTCATGTCTGTTTGCAAAGAATACCTTCTAAGTGAGCCATCCTCCTCCATTGTAGATAGGAACGGTGACCCTGTGTGGCCGTTAGCGCTTGGAGTCTTGTGGAGGTGGCCGGGATGGCTGCACAGTTGACTGTGTTGGCCTGGTCAGGTGTGTGTGCTGAGGGTTACCCATGACCTCTACCAGAACTCTAACCAAGAAGAATCTTTCTTCTGGCACATGACAAGTTTAAAGTTGAGCTTTAAATTGTGGCCAACTACTATATCAGCCAAGAGAGGTTATGAAAGTGGCTGCAGCTCTCTGTAGGGAGGTCCCAAATAGCACCCTGCAACTCACAATGAAAGCATGGCTCCTGGAACTCCTGGGGAGCTGGTGGTCAGGATATAGAAAATCCAGCTCCAGACCTGCTGTCCCAGGAGGGCCGGTAGAACTTAGAGATTTGTAGATTTATGCATGTGCATCATGGTATTTGGAGCCATAACTGGTTCTCAGTAAACACTGGCTTCCTCCTCTCTGGGCCCTAACATCATGCAAAAAATAGTAGCACCCTTAATATTTGCAACCTCCCACCTTTGAAGAGTAATTTTCAGACAGAAATGTGGTGAAAAGTATGAAGGGTGACCCGGACAAGCGCAAGAGGGAGATAGATATTGTAGATAAAAAATAATAATAATTTAAAAAATTCAAAATCAGTCAAAATGAAACTTCCTTGTTCTCATGTGAAAATATTTTTTTAG
Seq C2 exon
GCAAACTTTTTTGGTACCAAGTGCATTTTGATATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCTCAGTGTCATTATTCTTCCATCACCAAAAACTGCCTTAAACGCCACGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGTCCCACCGATGGCTGTGACTACTCAACTCCAGATAAATATAAGCTACAGGCACATCTTAAAGTTCACACAGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827:ENST00000377838:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.1),PF056057=zf-Di19=WD(100=7.2)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=33.3),PF0009621=zf-C2H2=WD(100=32.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACCATCACACATCAGCC
R:
TGAGTAGTCACAGCCATCGGT
Band lengths:
349-1157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains