MmuINT0178440 @ mm9
Intron Retention
Gene
ENSMUSG00000022335 | Zfat
Description
zinc finger and AT hook domain containing [Source:MGI Symbol;Acc:MGI:2681865]
Coordinates
chr15:68010273-68012720:-
Coord C1 exon
chr15:68011279-68012720
Coord A exon
chr15:68010506-68011278
Coord C2 exon
chr15:68010273-68010505
Length
773 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
3' ss Seq
ATGTGCAAATATTTTTTTAGGCA
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTTAGGTCCCACCCAGCTGAAGATCTTCACTTGTGAGTACTGCAACAAGGTGTTCAAGTTCAAGCACTCTCTGCAGGCCCACCTGAGGATCCACACGAACGAGAAGCCATACAAGTGCTCCCAGTGCAGCTATGCCAGCGCCATCAAGGCCAACCTCAACGTTCACCTGCGCAAGCACACCGGAGAGAAATTCGCCTGCGACTACTGCTCCTTCACCTGCCTCAGCAAGGGCCACCTCAAGGTGCACATCGAGCGGGTACACAAGAAGATCAAACAGCATTGCCGCTTCTGCAAGAAGAAATACTCAGATGTCAAGAACCTCATCAAGCACATCCGGGACATGCATGACCCGCAGGACAAGAAGGTCAAGGAGGCCTTAGACGAGCTCCGCCTCATGACAAGGGAGGGCAAGCGGCAGCTGCTCTACGACTGCCACATCTGCGAGCGCAAGTTCAAGAATGAGCTAGACCGAGACCGCCACATGCTGGTTCATGGTGACAAGTGGCCCTTTGCCTGCGAGCTCTGTGGCCATGGGGCCACTAAGTACCAGGCCCTGGAACTGCATGTCCGAAAGCACCCCTTTGTGTATGTCTGTGCTCTATGTCTCAAGAAGTTCGTCAGCTCCATCAGGCTGCGCTCCCATATCCGAGAGGTGCATGGGGCGGCCCAGGAGACCTTGGTGTTTACCAGCTCCATCAACCAGAGTTTCTGCCTCCTGGAGCCGGGCGGGGACATCCAGCAGGAAGCCTTGGGGGACCAGCTACAGCTGGCAGCTGAGGAATTTGTGTGTCCAGAAATTGATGTACGCAAGGAGGAGGCTTGTCCTGGGGAAGCTCAGCCTGAGGTGGGGTTGAGGGAGTTGGTGGTCCCTGGAGATGCACATGCCCCTCCACCTGGGCCCTTGGCCACCCCCCAGAGTGAAAGTAGTTCCCTGTCCCCCTGCAAACTAGAAACCACTGTGGTCTCCTCCGACCTCAACTCTCTTGGAGTGGTTTCAGATGATTTTTTACTGAAAAGCGATACCTCCTCTGCTGAGCCTCCCGCTGCTGCCGAGGCAACCTCGGATACACAGCATCGAGACTCAGCCCAGACTCAGGGTGAAGAAGTCACACTGCTGCTGGCCAAGGCCAAAAGTGCTGGACCAGACCCAGAGAGCTCTCCGGGTGGAAGGCAGAAGGTGGGTGCTCTGCCAGCCAGTGAATCTGACTCTAGCACATGTCTCAGGGCAAACCCAACAGAAGCCTCAGACCTCCTTCCTACAGTGACTGATGGAGGGGACCTTGGTGTGTGCCAGCCTGACTCCTGCACACCATCCTCTGAGCACCACCCTGGCAGCACAGCATTCATGAAGGTCCTGGACAGTCTCCAGAAGAAGCAGATGAACACCAGTCTTTGTGAGCGGATCCGGAAGGTTTACGGAGACCTGGAGTGTGAATACTGCG
Seq A exon
GTAAGGAAAGGCGGTGCTGGTCAGGTGTGCCTTTGAGCGCAGCTCTCCTTCCCAGCAGCCCTGGCCATTCCTTTCTTGCTATCCTCGCCGGGATTCCATTTGAGCTCATGTTGCTTTGCAGAGAACACCTCCTCCCTGAGGCGCCCTCCTCTGTGATAGATAGGAGAAATGAGCCCGTGTCAGAAGTCACAGTCGGAGCCTTCCAGGAGTCGGCTGGGATGATGCACCGCTGACTGTGTTGGGGGCCATGTTGGGGGCTGCCCACAACTCCTCCCACCTTCTGACCAAGAAGAATCATTCTTCTGGCCTTCAGTTGTGGCTCCATCACCTGGGTAGAGAGGGTAGGAGACTGTCTGCAGCTCTGCATAGGGAGGCCCAAGAAGCTCGCTTCTAACTGGGAGTGGAAGCTCACTATGCGAGCTCCCAGACAGTAGGAGTATAGGATGTGGGCAGCCTAGAGTGTAGCCCATAGCCTAGGGTGTCAAGAGGACTAGGAGGCTCTTGGCTTTGTACATTTGCAGGGTAGTGCTTGACAGAATTGGCTCTCCTTTCTCTTTTCCTGGCCCTAACACCATGTGGAAGCTGGTGATACCTTAATACTTGAATACTGCCAGTTCTGAAAAGTAATTTCCTGACAGAAATGTGGTGGAGAGTGTGAAGGGCATACAAGATAAAGGAGATAAATATGGTAGTTTAAGGATGATAATTTTAAAAAAAAATCAAATTTAGTAGAAAAGAAACTTCCTTGTTCTCATGTGCAAATATTTTTTTAG
Seq C2 exon
GCAAACTTTTTTGGTACCAGGTGCATTTTGACATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCCCAGTGTCACTATTCTTCCATCACCAAAAACTGCCTTAAACGCCATGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGCCCCACTGACGGCTGTGACTACTCGACTCCAGATAAATATAAGCTGCAGGCCCATCTTAAAGTTCACACAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022335-Zfat:NM_198644:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF127562=zf-C2H2_2=WD(100=16.4),PF0009621=zf-C2H2=WD(100=5.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(39.3=14.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGACTGATGGAGGGGAC
R:
GGGGCACTTCAGCAAGATGTT
Band lengths:
345-1118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: