RnoINT0167646 @ rn6
Intron Retention
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109127597-109130040:-
Coord C1 exon
chr7:109128602-109130040
Coord A exon
chr7:109127830-109128601
Coord C2 exon
chr7:109127597-109127829
Length
772 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
3' ss Seq
ATGTGAAAATATTTTTTTAGGCA
3' ss Score
5.78
Exon sequences
Seq C1 exon
GTTAGGTCCCACCCAGTTGAAGATCTTCACTTGTGAATACTGCAACAAGGTGTTCAAGTTCAAGCACTCACTGCAGGCCCACTTGAGGATCCACACTAATGAGAAGCCATACAAGTGCTCCCAGTGCAGCTATGCCAGCGCCATCAAGGCTAACCTCAATGTTCACTTGCGCAAGCACACTGGAGAGAAGTTTGCCTGTGACTATTGCTCCTTCACCTGCCTCAGCAAAGGCCACCTCAAGGTACACATTGAGCGAGTACACAAGAAAATCAAACAGCATTGCCGCTTCTGCAAGAAGAAATACTCAGATGTCAAGAACCTCATCAAGCACATCCGGGACATGCATGACCCACAGGACAAGAAGGTCAAGGAGGCCTTAGATGAGCTACGCCTAATGACGAGGGAAGGCAAGCGGCAGCTGCTTTATGACTGTCATATCTGTGAGCGCAAGTTCAAGAATGAGTTAGACCGAGACCGCCACATGCTGGTTCATGGTGACAAGTGGCCCTTTGCTTGTGAGCTCTGTGGCCATGGGGCCACTAAATACCAGGCCTTGGAACTGCATGTCAGGAAGCATCCCTTTGTGTATGTCTGTGCTATATGTCTCAAGAAATTTGTCAGCTCAATCAGGCTGCGCTCCCATATCCGAGAGGTGCATGGGGCGGCCCAGGAGACCTTGGTTTTTACTAGCTCCATCAACCAGAGTTTCTGCCTCCTGGAGCCTGGTGGGGATATCCAGCAGGAAGCCTTGGGAAACCAGCTACCACTGGCAGCTGAGGAATTTGTGTGTCCAGAAATTGATGTACGTAAGGGGGAGGTTTGTCCTGGGGAAGCTCAGCCTGAGGTGGGGCTGAGGGAGTTGGAGGCCCCTGGAGAAGCATGTGCCCCAGCCGTGCCCTTGGCCAACCCCCAGAGTGTCAGTGTTTCCCTGTCCCCCTGCAAACTGGAAACCACTGTGGTCAATTCCGACCTCAACTCTCTTGGAGTGGTTTCAGATGATTTTTTACTGAAAACTGATACCTCTTCTGCTGAGCCTCATGCTGCTGCTGAGCTAACCTCGGACACACAGCATCGAGGCTCAGCCCAGACTCAGGGTGAAGAAGTCACACTGCTGCTGGCCAAGGCCAAAAGTACTGGACCAGACTCAGAGAGTCCTCCAAGTGGAGGGCAGAATGTGGGTGCTCTGCCAGCCAGTGAATCTGACTCTAACAGGTGTCTCAGGGCAAACCCAGCAGAGACCTCAGACCTCCTTCCTACAGTGGCTGATGGAGGAGACCTCGGTGTGTGCCAGCCTGACTCTTGCACGTCGTCCTCTGAGCACCACCCTGGCAGCACAGCATTCATGAAGGTCCTAGACAGTCTCCAGAAGAAGCAGATGAACACCAGTCTTTGCGAGCGGATCCGGAAGGTTTATGGAGACCTGGAGTGTGAATACTGTG
Seq A exon
GTAAGGAAAGGCTATGCTGGTCAGGTGTGCCTTTGAGTGGAGCTTTCCTTCCCAGCAGCCCTCTCCATTCTTATCATGCTATTCTTACCATGGATTCCATTTGAGTTCATGTTGTTTTGCAAAGATCACCTCCTACCTGAGCCACCCTCCTCTGCAATAGATAGAAACAATGAGCCTGTGTCAGAAGTCCCAGTTGGAGCCTTCCAGGAGTTGGCTGGGATGATGCACTGCTGACCATGCTGAGGGCCATGTTGGGGGCTGCCCACAACTCCTACCACCTTCTGACCAAGAAGAATCATTCTTCTGGCTTTCAGTTGTGGTTTCATCAACTGGGTAGCAAGGGTAGGAGACTGGCTGCAGCTCTGCAGAGGGAGGCCCACGCAGCTCCCTTCTGACTGGTAGTGAAAGCTCAGCGTGGGAGATTCCCAGACAGTAGGAATGTAGGACGTGGGCAGCCTAGAGCATGGCCCGTAGCCCAGAGTGTCAAGAGGACCAGGAGGCTCTTGGCTTTGTACATTTGCAGGATAGTGTTTGACATAATTGGTTCTCCTTTCTCTTTTCTTGGCCCTAACACCATGTGCAAGCTGGTGGTACCTTAATACTTGAGTACTGCCATTTTTGAAAAATAATTTCCTGACAGAAATGTGGTAGAGAGTGTGAAGGGCATACAAGATAAAGGAGATAAATATGGTAGCTTAAGGATGATAATTTAAAAAAATCAAGTTTAGTATTAAAGAAACTTCCTTGTTCTCATGTGAAAATATTTTTTTAG
Seq C2 exon
GCAAACTTTTTTGGTACCAAGTGCATTTTGACATGCATGTCCGCACCCACACCCGGGAACATCTGTATTATTGCTCCCAGTGTCACTACTCTTCCATCACCAAAAACTGCCTTAAACGCCATGTAATTCAGAAACACAGTAACATCTTGCTGAAGTGTCCCACTGACGGCTGTGACTACTCGACTCCAGATAAATATAAGCTACAGGCCCACCTTAAAGTTCACACAGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140:ENSRNOT00000068291:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF127562=zf-C2H2_2=WD(100=16.4),PF0009621=zf-C2H2=WD(100=5.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(39.3=14.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCCAGTGAATCTGACTC
R:
AGAGTAGTGACACTGGGAGCA
Band lengths:
346-1118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]