BtaINT0164312 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017731 | ZFAT
Description
zinc finger and AT hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr14:8233944-8235101:+
Coord C1 exon
chr14:8233944-8234031
Coord A exon
chr14:8234032-8234951
Coord C2 exon
chr14:8234952-8235101
Length
920 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
GTCATCTGCTTTTCTTCTAGAGG
3' ss Score
8.71
Exon sequences
Seq C1 exon
GACAAAAGGAGTTATTCTTGTCCTGTGTGTGAAAAGTCTTTTTCAGAAGATCGGTTGATAAAGTCACATATCAAGACCAACCATCCCG
Seq A exon
GTAAGGTTATGCATCTCAGAGTGGGAGACCGATTTTAAAAATGCTTATGTTTATTTTAAGATACAGCGTTGTATAGCAGCTATGTTAAATGAAACTAAAAGAGGGATGAAGATATGAGTCCATTCAAGGGGAGGAGTTATCTTTACTTAAAACTCAGGTGTTTATATAACGATTTACTTTATTTTATCATTTTATCTAGTTTTCAAAGGCATCTGGCCCCAGTCTTGTGGCTCTCCTCCCCTTTTTAAAACTGTGCTGCCTTCCCAGGTGGCGCTAGTGGTAAAGAACCTGCCTGCCAATGCAGGAGACTTAAGAGACATAAGAGATATTCGATCCCTGGGTCAGGAAGATCCCCTGGAGAAGGAAATGGCAACCCACCCCAGTATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGCCACAGTCCATCGGTTCGCAAAAGAGTCAGACGTGACTGAGCGACTCAACAACAGCAACAGCCAGTTGACACAAGACTTTCTTTGTTGCAGTTGGGTTGTTTGAAAGAAGTTGTCATGTCGCCTGAGTTCCTTGTGTTCCACAGGACACCCCTACCCCAGGACACTGATTCGCTGGGGAAGCCCAGTCTTTTCCCCATATTTCCCATATTCTGCTTTTGTCCGACTATTGCCTTGTCATACTGCTCTCTACCGCTCACATTTTGTGTCAACAGGAGTCTAGGTCTGAGAGACTTGCTTAGATTCTGGTATAAAATAGCTTTTTAGGCAAAATTTCTCTCCCATGACCCCACAAGGCACAACTTAACTTGCTGCCTCAGAGCTGCCAGGATTGACTAGGGTGGGGGGTGTCCAGGCTGTGTCACAAGGCCCACTTACCTCTCACTGGAACCACAGTTCTTTGGCTGCTTCTGGTTGTCATCTGCTTTTCTTCTAG
Seq C2 exon
AGGTTTCCATGAGCACCATCTCCGAGGTTCTCGGGAGGAGGGTCCAGCTGAAAGGGCTCATTGGCAAGAGAGCCATGAAGTGCCCATACTGTGATTTCTATTTCATGAAGAATGGCTCAGACCTTCAGCGTCACATCTGGGCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017731:ENSBTAT00000023578:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.017 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(53.6=50.0)
A:
NA
C2:
PF056057=zf-Di19=PD(37.8=33.3),PF134651=zf-H2C2_2=PU(38.5=19.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAAGGAGTTATTCTTGTCCTGT
R:
CTTCATGAGCCCAGATGTGACG
Band lengths:
238-1158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development