GgaINT0101918 @ galGal3
Intron Retention
Gene
ENSGALG00000016207 | ZFAT
Description
NA
Coordinates
chr2:148264861-148268123:-
Coord C1 exon
chr2:148268036-148268123
Coord A exon
chr2:148265011-148268035
Coord C2 exon
chr2:148264861-148265010
Length
3025 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
ATCTATCACTTTTCTCTCAGAGG
3' ss Score
6.99
Exon sequences
Seq C1 exon
GATAAGAAGAGTTATTCCTGTCCTGTGTGTGAGAAGTCATTTTCCGAAGATCGACTTATAAAATCACACATCAAGATAAACCACCCTG
Seq A exon
GTAAGAAAAAATCAGGGAAATTTTCTCAGTCTATTACAGTTCAACTATAAACTTTAGAGTGAGCAATATAATGTGGTTACATTCCAAAGAAAAAAATCTATGTCTAATTTAATTTGTTTTGATTAAGGATATTATAGGGTTTGCAGATGTTAGAATTTAGAATGAAAAGGTTATTGTTCCAGGTATGTCAGGTAATTGTGCTAAGCCATCTGACTTCACCTAGCAAAAAACTCATTTCTGTCCAAAAGATGACATTAGTGAATTCAAACTAAGTATCAGCATGTCCAGAATTAGTCGCATAGATATTGTGTAACAGCACATTAGACATAAAATTCCCATTGCCCATACATTAACTGACAGAAGTGAGTTTATTGCACATTATTTTGTCTGTTGGTAGTTTGTTTTGTTTGTAGATAAATTCACATGAATGCAGAGGTCCCTGGGCTGACTCTAGGCCTGCTCAGTTAGGATGTGTCCAGGCTTTATCCCCAGGGCCACCTGAAGTCTGCAGTAGGGCAGTTACTAGAACCTGGTGTAATATTCTATGGCCAGAATTAAGCTGGATCCAAGCTAGCTACTGCAATCCAGTCAAAATCTTTTAAGATTTGCTTTCTAATGCCCTGATTTATCAGTTCAAACACAATGGCAATATTTCCTGCATCAGTTTTTGTATGATATTAGATAGAATGACTCACTGCCACTTGGATAATGGGAGTTGACTGTACAGGCTAACATACTTTAATCAGCTCATTTTACAGTGATGCTTACCACTTGATATAATTTGTTACTAAGTAGGAAAATACCAGTTAAGTTTGGGAAAAAAAGTTTAAAATGTCTTTCATAGTCATTGTCTGAAATACAGCATAATAGGTAAAGCAGTAGTTTCTTATCTTCCTACTGCCACTAGATAGTGCTAGACTCGTGTTTTTAACAATTTCCTTTGCTCTAAGTTCAGACTAGCTTCCACTTCAGCTCTCTTTTCCCAAACCTCTTCATTTGCAGACCACTCTACAACAGTGTGCCTGGTGGAGGGCTTGTCATATGTTATGGGATGTATCTGGTGCACCAAGCTGAGATGAGGAAAGGCTTATGTGCTATACTGTAGACAGTAGATAAGTCACTCAGTAAGCATGGAAATTAAAGTTCAAGAGCTGTGTCTGTAAAGCTTTTGTATTGCCTTAGCCAGGGAATATATGTGGCCTCTCTAAAGAATGTAGTCTGTGAATTAGCAATGCACTATACATTGTGCCCTTAAAGCTTGCCATTGGTCTGCACTGGTCCATTGACTACTGAATTATTTGTGTATGCTGTGCCTGGAATCCAGAAATACAAGTTAACTCTGGAGCTGTTCTGTGCTGAACTCAGGAATTTAAATACAATGAACAGTTTGTTTTGTATGTGATTCCTTCTAAAAGTATAGGATGATTTTTTGATTTGGGAAACTGCATTCTTTTAAACTCTTGATTATAATAGAAGTAAGGTTAAAAATATATATGTATGTACAGCCTATTATTTATGTCTTCATTTCTAATTCATATATGTGAATAGAACTTATCTAATAAATCTGGTATTTTGCTGCTATACCTCCATGGTACTAACAAAATACATCTAAGATATGCCTATGCAGTAGTTATACAACAACACTACATTAATATATTGAGCAGCTGTAATGCACAATTCTTTGCACTGTACATGCAGTCCTTGTAAGCAGGAGGAAATCCTTTATTCTTCCAACATACTTAATTACAAGCCAAATAAATGTAAGGAATGTGTTGTTGTAAATTGTCAATTACTGAATAGAATGACTGCCATTGTTTTTAAGAATGTAAATGGGAAAGAACAAAGATGAAAGAAAAAGATGAATACTGTTAAAAGGAATTGAATTTTAAAAAGACACATCAAAAATTAATTTAAACTGAAACTATTTCATATTTATCATTAGAATGTTATTTCTGTAGCTCTTTTCTCCTTCCTTTCTTTATATCATTCAGCATGCCCTGCTCTCATTGCTTCAATTTTCACACAAGTATAAAATGTGTTGTTAAATAATACTCCTTCTTTTACTAGTTTTGCAGAGGATAGAGTTGAACTCTAGTCCCATGAAGTCAGTAGGACAAAAATCTCTTTAGATTTTTGTAGAGCTGTATTTTAAACCAGAGACAGAGAACTTGGCCCTTTTGCCCAATGATTAGGGAACTCAGCAGTAAAGGAGGGCTCATCCCATATCTCAATATTACCTAGCTTTTGACCAGGTTTTACCCAGCTTTTATCTGATTTAATATAAAATGTATTAATAGTCCTGAGACATGAGAGGCATCAACTTTCATAGATCCCTACTGAGCAGACATACAAGCCTGAAGTCATGAATCAATAATCTACGATGGAAAATATGTGAGGGTCCAGACCTGTCTGTGTTTTTTCTTGAGTACTTTAAACAAGATTGGATGGGACCCAAGACTTAATTGAGCCTGCTAAATTGGCCCTACTTGGAACAGGTGACCTTAGAAGTCTTCCAGATGCATTTATGCCAGAAGCCTGTTTTTTCACTTCAATTTCTGATTATCAGGCATTCTAAGGTCATAGTTATGACTGAAGTGAAGTATTGTGATCCTTGACATCTCTGGAAAGCTGGGGTGAAATTTTGAAGAAACTCTTCTGAAAATATTGAAGAAAAAAGCACTAAATTAGTTTATTGGAAATGTTCATAGTTGGAAAATGGTGTTTAAGCCAGTGGCACATGCCACTAAATAAATAAAAATTTATTTATTGTAACCAGATAGTGGGGATTATTGAGTATGCAGATTGAGAGAAAAAGGTAAGAACATATGAAAAGCTTTAAAGGAAAAGGCCCTGAGGTAGAAGTGCTGTATTTATTGCTTAGGTACTATCTGAGTGGCAGGAGGGAAGGTAAAACTTAGAAAAATCTGAAGTGGATCAGGATCTAGTTCTTCAGTATTAGTTATGTAACAGAGAACAAATTCCCTGATACCCTTCTTGTTTTTATTATCTATCACTTTTCTCTCAG
Seq C2 exon
AGGTTTCAATGAGTACCATTTCTGAGATTCTTGGCAGAAGAGTTCAGTTGAAAGGACTTATTGGAAAACGAGCTGTGAAATGTCCCTACTGTGATTTTTATTTTATGAAGAATGGGTCAGATCTTCAGCGTCACATTTGGGCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016207:ENSGALT00000026126:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(53.6=50.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=19.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]