RnoINT0167648 @ rn6
Intron Retention
Gene
ENSRNOG00000025140 | Zfat
Description
zinc finger and AT hook domain containing [Source:RGD Symbol;Acc:1310886]
Coordinates
chr7:109121815-109123316:-
Coord C1 exon
chr7:109123229-109123316
Coord A exon
chr7:109121965-109123228
Coord C2 exon
chr7:109121815-109121964
Length
1264 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CACTCTGCTTTTTCTGACAGAGG
3' ss Score
8.14
Exon sequences
Seq C1 exon
GACAAAAGGAGTTATTCTTGTCCTGTATGTGAAAAATCTTTTTCAGAAGACCGATTGATAAAGTCACATATCAAGACTAATCATCCAG
Seq A exon
GTAAGGTTATGTATTTAAAAAGAAGATTAATTTTTAGATACTTATGTTTATTTTAAAACATAGTACTGTAGTAAGAGGTACCAGCTTAGAATGAAGAGGGAGGATTGAATGAATTCGGTATTTGAAATGTTCTTGCCTAAGGGAATACCTGTGTCTGCCTTGCTCCACCCTGCACTGTGGTAGGTATGCTGACTACCGACCCCTCCAGGAGATGTCAGTTTTACTTCTATGTGATCTTTGAGGTGAACCTTACTGCCAGACTCCATTGTCATATTAAATAGGGCAGACCGAGCAGACCTGGGTACTCTGTGTTAATTAAGTACGTAGCAAGCAAAATATACCTCCTTCTCTATTCTTGTCTCTTCTTCTTACAAATCTGTATGTGCCCTTGATAGAAGAGACTGGAATTCTCTGTGAAGAACAAAGGGCTCTGACTGTTTTAGCTGGGGACACATAGAGCCTTGAACCTTTGTCGGTGTGGGAACTCATGGCTTATGCCATTTGTTCTATGTAACTTAAGTGTGAGCTGACAGCAGCATTTAGAAGCATTGACCTTTGATCATGAATACAGAATTTTGCAAGGAACCTTGTGTGTCCAATCTCAGCCTCCACATGCTTCTTCTACATTTTCCAAGCTCTTTGTATGTATCCATCCATGAACTGTTTTCTAGAATATTCTAAAGTTTATCTTATTTAATTTTCCTATGAAAGCCTTTACAGGTTATCTCCAATAAATAATGTGTTAGCTTAGGATGACCTCTGTGTGACCTATAAAAAGCGGTGCTAACCTTGGTTCTTACTGCTTCCTGTGATATTATATATGGCCATTTACAACATCCTGAATTGGTCTAAGACTCTCTTTTTGGTACAGTTAGTTTGAATCAAGCTGCAGTATTTTAGTGATTATGTTACTTACATTCCTTGTAGTCTGTAGAATCCCCAGTCTGCTGTCTGTTTTCCACACCACTGACTTCTGGGAGAAACTGAGTTACTTTTTCCATGAAAAGCCTGTGCTTCACATTTGTCTTGTCATTGCTTGGCAGTGTTTTCTCCATTCTTCATACTGTAGGTTAACAGGTTCTTAGATCACGGCTTCATCGGATTCAAGTTTAGCCTTTTCGGTAAAAACCCTGTTTCATGCACCAAGGGTGCACTTGATGGGTATTTCTTAGGTATGTAGGTGCCCCACGGCAGCTTATTTACCTCTCACCTGAAGAGCAGAGTGCCTTGTCCTCTCTGATTATCACTCTGCTTTTTCTGACAG
Seq C2 exon
AGGTCTCCATGAATACCATTTCTGAGGTTCTTGGGAGAAGAGTCCAGCTCAAAGGGCTAATTGGAAAGCGAGCCATGAAGTGTCCGTATTGCGATTTCTATTTCATGAAGAATGGCTCAGACCTTCAGCGGCACATCTGGGCTCACGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025140:ENSRNOT00000068291:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(53.6=50.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=19.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAAGGAGTTATTCTTGTCCTGT
R:
CCTCGTGAGCCCAGATGTG
Band lengths:
238-1502
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]