DreINT0177876 @ danRer10
Intron Retention
Gene
ENSDARG00000077987 | zfat
Description
zinc finger and AT hook domain containing [Source:ZFIN;Acc:ZDB-GENE-130204-2]
Coordinates
chr16:25434523-25436345:+
Coord C1 exon
chr16:25434523-25434607
Coord A exon
chr16:25434608-25436195
Coord C2 exon
chr16:25436196-25436345
Length
1588 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
AATTTTGATTTCCACTGTAGATG
3' ss Score
7.4
Exon sequences
Seq C1 exon
GTCAAAAAGAGTTTTACGTGCCCAGTGTGTCAAGAATCGGTTCCTGAGGATAAAGTTAGAGCTCATACCAAGATCAATCATCCAG
Seq A exon
GTAAGAATAAATTAAACACTTGGAACCAAAATAGCCATGAATGAAACTAATAGATGAGTTGTTATTATATACAGTGGAGATCCAAATTAAAAACAGAATAGAATAGAATAATTGAGCAAATCACAATATATTTCGCTTGAAAAGGCTATTTGAAAACTTCACTTTCATATTTCTCACCATTATTAATGTTAATTTGGCACCTGGTGGCAAATTCTATAAATATCTGACAAATCCTAGCTAACTGGCAGCCTAACATTGCAGACTTCACTTTGCAAGTTGGTAACCTGTCTTAAAGTGACTGAAACCCTCAGACAGTAGGGGCCCTGTCATACACCCTGTGCAAGACATGTATTGGCGCAATTTGCTGCTATTTTCAGGCCAGCGCGACCCTGATTTTCACGTTTTGCACCACATTGTTTAAAAAGCAAATACTTTTGCACCACTTTGGGGACTCCTGGGCGTGCTGGTCTAAAATAGAGTTGTTTTAACGCGCATTGTAGGCACGTTGCTTTTTTAGAAACCAAAATAGACTGTGCCCTTGACCATCTAAAAGCAGGTCTAAAGTCCAGCGCAGAGCATGTTAGTTATGCGCCTATGTGGGTTCAAATGCTTACACATTGCTTAATACACACAGCATGTACAGCAATACACAGATATCTTTACATATAAACATAAAAACCACTGCCTCTATGCCTCATCTCGTGCAGCTTTTTCAGTTTATTCATGACAATTTGTATAATGTTATTATTATTAGTGGTGCTGTTTATTATATGCTTATTTATATTTGTTTTAATAAAAACAAGTTTAGATTTGTCCACTTGTTGGGTTTTGGAGACGTATAATAGGACGTGTGTTTGGATGTTTTTGAAAGCACTTTGTTATTATTGTTCATTTATTCATTATTATCTTTGCTCTCAACAAACAAAATTGTATATGTAGGCTGATGGATGTCTTCAGTGGAGTGCGTACAACACTGTTTCCTTATCCGCGAAAGTAAAGGAGTAGAGTAAATGTAAAGAGACCAAATGGAGGAGGCATGTTTTTTATCCTCGAGCTGCAGGTGGCCTGTTTAACTGTTTTTCCACTTACAAAATCCGCCATGTAAATAGCAAATGCACCATGGCGTGACGCAACTGACTCTTAAAGGGAATGGGAGATGAGACTCTGATTGGTTTAATGCAAGTTCTGCTTAAAACACACCTATAGCTCATTAATAGAATAAGCACAAACCTGTTAGACCATGTGCCGTGGCGCAGAGTGTATTTTTCTATCTTTAAAATAGCAAAAGTGGATTCAGACATGCCCACAATGCTTTTGTGCCATGCACTTTAGACTTTGTGCATTAAAATAGACAGATGGATATGTTTATCAGAAGAGTGGCCTACAATTTTTTAAACTGCTCTTACCTTTAGAAAGTTTATTTGGAATCTTTAACCACTGTTTTCCACAAAATGTGTTTAAGTGGAGGTTTTTTGTGTGTTCTGCTAGCATGGTATAACCACAAGTATATTCCCTAAAATGTTTAACCAATGCATATTTTATTATTTCTGAATAAATCAAGCATTTATAATTTTGATTTCCACTGTAG
Seq C2 exon
ATGTGCCATTGAACGTCATCTCGGAGGCATTGGGGATACGCGTACATGTGAAAGGAGTGATCGGGAAACGAGCATCCAAATGCCCATATTGTGACTATTTCTTCACCAGGAATGGCGCTGACCTTCAGCAGCACATATGGGCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077987:ENSDART00000156351:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(48.0=41.4)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=19.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAAGAGTTTTACGTGCCCAGT
R:
CATGAGCCCATATGTGCTGCT
Band lengths:
230-1818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]