HsaINT0185401 @ hg38
Intron Retention
Gene
ENSG00000066827 | ZFAT
Description
zinc finger and AT-hook domain containing [Source:HGNC Symbol;Acc:HGNC:19899]
Coordinates
chr8:134588246-134590355:-
Coord C1 exon
chr8:134590268-134590355
Coord A exon
chr8:134588396-134590267
Coord C2 exon
chr8:134588246-134588395
Length
1872 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
ACATCCTGCTTTTCTTCTAGAGG
3' ss Score
9.08
Exon sequences
Seq C1 exon
GACAAAAGGAGTTATTCTTGTCCTGTTTGTGAAAAGTCTTTTTCAGAGGATCGATTGATAAAGTCACATATCAAGACCAACCATCCTG
Seq A exon
GTAAGGTTGTGCATTTTGGAGTGGAAGATTAATGTTAAAAATGCTTATGTTTATTTTAAAACAATGTTTTACATTAACTGCACTATATAGAAATAAAAAGGGATGAAGCTGTGAATATATTCATGGGAAACAAACATCTTTATTCGACGCTGGGAAGTTGATGTAATTATTTATTTCCTTTTGTTCTTTTATCTGGTCTTCAGATGCATCAACCCTCACCCCTGCAATTTCAGTGATACCCTCTGCCCCTTTTAATGGGAACTTTGCATGCCTTTCGATGGGTCGCATATGAGGCAGGGCTGTTGTCATAAGCTTGTGTTACCCAGAGTGGTGGTTTGTAAGGGGTGTTGGCTCCTGCCCAGGCTGAAGAGCATCCTTGAGTTGGAGAGACCATTACCACGGGTATTCTCATATTCCACACTGCTCAGGTGCATGAGGCACCAGCTACCTGGGTGTTCATACCTTGTCATTTCTGTTCGTGCCACCTGGAACATTTTCCCTTCTGCCCTACCTGGTTAATTCCTGTTCATTCTTTGCATTCTTCCTCAGAGCCCTGCCTCTGGGGAGGCTTTTGTAGCTTCCAGCCTGGCCGAGGGTCCACCCCGCACCCCTGCTAACGTCACACAGGGCGCACTGACCGCTGTGCTCAAGTCACTGTGACTCTCCAGCAACTCCCATGGGCTCCCTGAGTCGGGGCTTATCCCGCCTCATCTCCAGTGCCTCTACAGGCAGGCCCAGGAAAGCAGACAAGTGTATTGTGTGTTTTATGAGGGAGTAACAGGTACTTCTTCTAAATGTGCCTCTCCCTTCGTACATGTCTCTTTTTTCCTGTTCTTTATTTTGTATTTGCTCTTGGTATAAGGGAACTGACTCACTGATTATAAATGGAGGAAGATAAAGAAATAATAGAAGGGCACTAACACTCATGTTTCAGCTGGGAATGGACAGAGTTGTGAGGCCTTCGTCTGTGTGGGCTATGTGCTTCTCTGAAGGCCCAGCTCTGTCCTTCTCATGTTAACTCATGTCCTAAGTGACATGGGATCCAATGTGAGCCAAAGTTATTCTTAAAACAGCTAACCTTTGCTGATGAACAGATGTAAGACATTATTTTGTTATTATTTTAAGCTTTTTATTCCAGAAAATCCCAAAATACAAGAGCACACAGAACAATGCCAGGAACCTCCTGTATCTGTCACTTAGCTTCCACAGTTATCCACATTTTGTCAAACTCTTTTTCATGTATCTACCACACACACTTTTCTTCTTCTAGGATATTTTAAAGTATATTCCAGACAGCATGTAATTCCTCCATAAAAACGTTTAAAATGCATCTCCAAATAATAAGGATTGCTTTCAACATAACCACCATGTTACCGGTAAAGCAAATAGGATCAACTGTCATTCATTATTGCCACCTATTATCAGTCTGTTTAAAATTTCCCCAATTTCCCCAAGATTTTTCTTTTTAACTGTTGGTTCGCTTGAACCAGCATCCATGCATTTGCATCTAGTGGTTTAGTTCATTATGTTTCTGTTTCTTGTTTTCTCTAGTGTCCTGCTGTGCTTTTTTCCATGACATTGACTTATGGGGGAAACTGAGTCACTTTTCCTTTAGACAGTTTCACTTTCTGCATTTGTGTGGTAATTGCCTTGTGATGTTGCTTCTCCATTCCTCATACATGATGTTAACAGATACTGAGATCTGAGACTCGATTTGGTTCTGGTTTTACTTTTTAGGTGAAAATCCTGTCTCTGGACACCATGAGGCACACCTTGATTCCTCCTGTGGGTGCTGCTTAGCAATGAGGTTTATTTATGTCTAACTTCCCCTGAGGTGCTCTGACTCCTTTTGACATCCTGCTTTTCTTCTAG
Seq C2 exon
AGGTCTCCATGAGCACCATTTCTGAGGTTCTCGGGAGGAGGGTTCAGCTGAAAGGGCTAATTGGAAAGAGAGCCATGAAATGCCCATATTGTGACTTTTATTTCATGAAGAATGGCTCAGACCTTCAGCGTCATATTTGGGCTCATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066827:ENST00000377838:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PD(53.6=50.0)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=19.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAAGGAGTTATTCTTGTCCTGT
R:
CTTCATGAGCCCAAATATGACGC
Band lengths:
238-2110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains