BtaINT0164741 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36419651-36420378:-
Coord C1 exon
chr12:36420228-36420378
Coord A exon
chr12:36419767-36420227
Coord C2 exon
chr12:36419651-36419766
Length
461 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ACATACTTTTTCTCTCTTAGGTT
3' ss Score
11.14
Exon sequences
Seq C1 exon
AAATATGGAAAACTGACCACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGTATAGGTCCTAATGGGTATATGGAGCCATATTGTTCAACTGCTTGCATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
Seq A exon
GTAAGTTTCAGGTATTTGGAAAGTTTAAGAACTTTAATAACATTAATAATTTCTTAACTATTTCTTCTCTTTTTATGCTCATTTTAAACCACATAAATGGTTTATTTTTATCATCACACTAAACTTTGTTAATGTAAAAAATTTTTAATGGTTTTGATAATTTAGTTTTTAAAATATTGGTGTGGAGTTTGTCCATGCCTGTGTTCTTAGCTAAAATTGTTTTTCCATTTAAACATTATCTAAAACTGAGATTGTTTCATGTATCTGTGTTTGTTTTGGAGACATGGTATCAGACTCTTTTATGACAGTATTTTTTTAAGGTGCAATTAATCTCAGAAATTAATAAAATAATAATATATAGAAAGTTTCATTAGTAGACTAGTCTGAGAGGTCAGTTAAGATTTTTAGGAAAAACCTTGGCTATTTCATAAAAAATCTGATACATACTTTTTCTCTCTTAG
Seq C2 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGGAACTCTTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAGTTGTATAACTTTTGCAATTCCAGTTGTGTGGCTAAATTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
NA
C2:
PF064679=zf-FCS=PD(90.2=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAACTGACCACTTGTACTGG
R:
CTGGAATTTAGCCACACAACTGG
Band lengths:
262-723
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development