GgaINT0106894 @ galGal3
Intron Retention
Description
NA
Coordinates
chr1:183373501-183374567:-
Coord C1 exon
chr1:183374417-183374567
Coord A exon
chr1:183373617-183374416
Coord C2 exon
chr1:183373501-183373616
Length
800 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
3' ss Seq
AAACTACGTTTTTCTTTTAGGTA
3' ss Score
10.34
Exon sequences
Seq C1 exon
AAATATGGCAAATTAACATCTTGTACTGGCTGCAGAGCTCAGTGCAGGTTTTTTGACATGACTCAGTTCATAGGACCTAATGGATATTTGGAGCCATACTGCTCAACTGCATGCATGAACACACACATACCAAAATATGCAGAATCACGAA
Seq A exon
GTAAGTGACAAGGATGATAGATTTTCATCACTGATAAGTGTAGACTGGCTTTGTTGTTATTTGAACAGCGGGAGTGGGTTATCTTGTTTTAGAATGATTCTGTGAAGATGCTTAGTGACTCTAGGTTTTAAATGTAGATTTTATAAAAAGATGGTGTTTTTTATGTTTTTAAGATGCTAGTATTTAACACTAGCAGAGGAACCCATGGAAGGTAATTCTCCTCACTGACCTTGTTGCATGATTTCTGGAACTCTTCAACAGTTTTAAGGCTTCTGGGTAGAAATAGGTCAAGAGACAATGTGTTCTAGTCTGCCACAGGATGACAATGCAGCTACTATGCTTGTAAAGTAATATTTTCATGTCTTGGGGTTACTCTGTTTTATCTCCTCAAACAGTTGTTGATAAATTTTGTCTCTTGGTGAAGGATGGAAGTAGTTATGTGTATAGATATTCTTCAGAAAGATGTTTAACTTGGGTGAAAGAAATGGATAAGTAAGTTCAAAACTTGTGTTCTTCAATACACAAAGGAGACTTAATCTCGGTTCATCAGACTCTTAAGTTCACAATACTCTACTGGGTTTTGTAGAAGGTGGTACTGCTTCACGTTTAGTGCTCAGTTTTAATGGAAGAATTCAGAAAAAAAAAAAACTCTCCAAGATTTTTTTGTGTGTTATGTGACTTAGAAACTCACTGGAAAACAGAAAATTAGCTTTTTACATTGAAAGGCTGGCCTGTAACCCAGTATTTCTTACATTACTATTTTGTATTAATTTTGTTTGTAAACTACGTTTTTCTTTTAG
Seq C2 exon
GTATGGAAATTATTTGCCACTTTTGTAAACGAAACTCTTTACCTCAGTATCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAGTTCCAGTTGTGTAGCTAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000027684:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4)
A:
NA
C2:
PF064679=zf-FCS=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAAATTAACATCTTGTACTGGC
R:
CTGAAATTTAGCTACACAACTGGA
Band lengths:
262-1062
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]