RnoINT0169129 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37191949-37192878:+
Coord C1 exon
chr15:37191949-37192099
Coord A exon
chr15:37192100-37192762
Coord C2 exon
chr15:37192763-37192878
Length
663 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATATATCTTTTCTCTTATAGGTT
3' ss Score
11.17
Exon sequences
Seq C1 exon
AAGTACGGAAAACTGACAACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGCATAGGTCCTAATGGATATATGGAGCCATATTGTTCAACTGCTTGCATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
Seq A exon
GTAAGTTTCAGATATTTGGAAAGTTTAAAGAATTTAATGACATAATTATTTATTAAAGGTAACTGATCTTATTTTTATTTAGTTTTAACTGTTTTTTGTTTTCCCTAACTAACTTTGGTGATTTCCACACTTGTTAATTTTTAAAAGTAGTGACATTTTTTTCTGTATCTGAAATTTTTACCCAAAACTCTTATTACACCCAAAAATATCTAATCCATATTTTTATGTATCCTTGTATGTTTTAGGTAATTTGACAGGTATTTTTTATTTTTTATTTTTTTAATGGCAATACTTTTCTATTAAGTATCTATTTTTATTTTATGTGTCTGGGTGTTTTGCCCAAATGTATCTGTGCACCTTTGTGCATGTAGTGCCCATAGACGTCAGAAGAGGGTGAAGGATCATCTGGAAATGGAGTTACAGGTGGTTTTAGCTGTCTGTGGGTGCTGGGAACTGAACTTTGGTCCTTTGAAAGAGCTCTTACTGCTCAGCCATCTCTAAACTCCTGACAGTATTTTTTAAAGATGGAAATAATCTTGAATAACTTAAGTTACAAATAATAGAATAATTTATAAGAGACCCATTTTTAAAAATTAGTTGCCATTTGTAGAAAGCCTTATTTTACTTTATAAAGAAATGAGGTATATATCTTTTCTCTTATAG
Seq C2 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACGATGCCTGATGGAAAACTGTATAATTTTTGCAATTCTAGTTGTGTGGCTAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
NA
C2:
PF064679=zf-FCS=PD(90.2=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTACGGAAAACTGACAACTTGT
R:
ATTTAGCCACACAACTAGAATTGCA
Band lengths:
262-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]