MmuINT0180479 @ mm9
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:57539424-57540454:+
Coord C1 exon
chr14:57539424-57539574
Coord A exon
chr14:57539575-57540338
Coord C2 exon
chr14:57540339-57540454
Length
764 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATGTATCTTTTCTCTTATAGGTT
3' ss Score
12.11
Exon sequences
Seq C1 exon
AAATATGGAAAACTGACAACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGCATAGGTCCTAATGGATATATGGAGCCATATTGTTCAACTGCTTGCATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
Seq A exon
GTAAGTTTCTGATATTTGGAAAGTTTGAAGACTTTAATGACATACTTGTTTATCAAAGGTAACTGATCTTATTTTTATATAGTTTTAACTGTTTTTGTTTTCCCATACCTAACTTCGGTGATTTCCATACTTGTTAATTTTTAAAAGTTAGTGAGGTTAACTGATTACACCCAAAAATATCTAAAATATATTTTTATGTATCTATGTTTGTTTTAGGTAATTTGACAGCTATTTTTAGTTTTTTATGGCAGTACTTTTCTATTGAATATTTATTTTTATTTTATGAGCCTTGGTGTTTTGCCCACATGTGTCTGCACCTGTGTGTATGTAGTGCCCACAGAGGTCAGAAGAGGGTGAAGGAGCTTCCTGAAATGGAGTTACCGGTGTTTGTTAGCTGCTGTGGGTGCTGGAAACTGAACTGTGGTTCTTTTTTGTTTTTTTGTTTTTTTCCGAGACAGAATTTCTCTGTATAGCCCTGGCTATCCTGGAACTCACTTTGTAGACCACGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCACCACCACGCCCAGCTGAACTGTGGTTCTTATTGCTGAGCCATCTCTCAAACTCCTGGCAGTGTTTTTTAAAGATGGAAATAATCTTGAATAACTTAAGTTACAAATAATAGGATAATTTTAAAAAATCAGTTAACATTTTTAGAAAACCTTTTACTTTATAAAGAAATCAGGTATGTATCTTTTCTCTTATAG
Seq C2 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTATAACTTTTGCAATTCCAGTTGTGTGGCTAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945-Zmym2:NM_029498:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
NA
C2:
PF064679=zf-FCS=PD(90.2=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAACTGACAACTTGTACTGGT
R:
CTGAAATTTAGCCACACAACTGGA
Band lengths:
262-1026
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: