HsaINT0185997 @ hg38
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger MYM-type containing 2 [Source:HGNC Symbol;Acc:HGNC:12989]
Coordinates
chr13:20026519-20027318:+
Coord C1 exon
chr13:20026519-20026762
Coord A exon
chr13:20026763-20027202
Coord C2 exon
chr13:20027203-20027318
Length
440 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
ATGTACCTTTTCTTTCCTAGGTT
3' ss Score
11
Exon sequences
Seq C1 exon
TTTGCAGAGGCAAAAAGTGTAATGAAAAATTGGTAATTCTTTTCTAGTTAAGTTGTAGTCTTAAAAATTATCTTTTTATGTTTCAAATTTTAGAAATATGGAAAACTGACAACTTGTACTGGTTGCCGAACACAGTGCAGGTTTTTTGATATGACTCAGTGTATAGGTCCTAATGGATATATGGAGCCATATTGTTCAACTGCTTGTATGAACAGTCACAAGACAAAATATGCAAAATCACAAA
Seq A exon
GTAAGTTTCACATATTTGGACAGTTAAAAAAACTTTACAACGTAATTAATTTTTGCATAAATACTCATTTGATGTTTTTATGCTTGTTTTTAACAGCTTTTTATTTTATATTAATCTTTTTGAAAACTGTTCTAATTATTTTGATTATTCTGTACTACTTTTTTAGTTCTCTTCATGTCTATGTTCTTAACTAAAATTGTTACTCCATCTAAAAAATTACCCAAAACTGAGTTTTTTCTCTATATCTATGTATGTTTTAGTGGCATAATATCAGAGTCCGTTATGACAATATTTTAAAAGTGCACATAATCTTCAGTATTGAAGGTGCAAATAATAATAGTTTATTTTTTAACAGAAACTTCTATGATCTCAGTAGTTAAGATAAAAAAACTTTTTTATTACTTTATAAACAAATCAGATATGTACCTTTTCTTTCCTAG
Seq C2 exon
GTTTGGGAATTATTTGCCATTTTTGTAAGCGAAACTCTTTACCTCAATACCAAGCCACAATGCCTGATGGAAAACTGTACAACTTTTGCAATTCCAGTTGTGTGGCTAAATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741:ENST00000382870:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(95.3=80.4),PF064679=zf-FCS=PU(7.3=5.9)
A:
NA
C2:
PF064679=zf-FCS=PD(90.2=94.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCAAAAAGTGTAATGA
R:
AGCCACACAACTGGAATTGCA
Band lengths:
348-788
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains