BtaINT0164784 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110924685-110926484:-
Coord C1 exon
chr3:110926373-110926484
Coord A exon
chr3:110924934-110926372
Coord C2 exon
chr3:110924685-110924933
Length
1439 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
TTTTCCCCTGTTCTGTTCAGGTT
3' ss Score
10.35
Exon sequences
Seq C1 exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAACCTACAATACTTCCTAATG
Seq A exon
GTAGGATGATTATATTTTGATTCTTTTCATGATATGCCTTCTTAAATTGCTTAATTTTTATGCTTATCTTTTGTAAATTGTTCCTTTTATATTTGTCTTGACTTATATTTGGACTTTTGAGGAGAAAATCTTTGGTTTATTATCAGTTACTTAATAAAACTATATCTTGCATATAGCACATGAAGAGATAATGACTACTCGATATAAAAAAATAACTAAAGGCTACATTTACTTTTTAGAAACCATTTTTGATATGGTAGTATTGGTAAAGTTGTACACTATACCAGTAGCTGCCACATATACTACTTTTAGACTCTGTTAGCAGTAGATCTTCTTCAGTATTTTGAAAAAAGTACCCTGAACTTGTTAAGAGAGTTAAGTCTTCATCCTTGAATTGTCTATGACCATATGTCTTTGGACAAGCCCCTAATTCACTCCTGCTCTCATGCTCCTTGCCTGTGAATGGAGAGGTTGAATGTAATGCCCAGAAATGTGGTCCCCTTCTTTTGGGCTACAGAGAACCTATGAAGCATTAAAAGGAATACAGTGGCATGATGCATTTAGCTTTTAAAGGAGGAGCTAAGAACCTGTATTTGGAAGTAACAAATAATGTATTCGTGGGCAGTCTCCCAAGAATAGAATGAGAGGTGGTAACAAAGAGGATTGGGGAGAGAACATTAGGAAAGACCTGAGTTTAACGGATATCATGAGGAAGCTGTGTTTAAAAGTATACTAATTTTAATTCTTCTGACCTGTGCTTTTCAGGAAAAATACAGATAAACTATTGTGAAGTAATTTCTCTTAATATAAGTTTTAAATAGGAGCTGCTTTCTAATGTTGTTAGCCAAATAAAACTGAAGCAGTTAACAGTAAGCATAATGATCTCAAACAAGAGTCTGCTAACTGCACCTCATGGTTGGATCTGGCCTCTTGCCTGTTTCTATATAGTTTATCAGCTAAAAATATTTTTTTACATTTCTAAATAGTTGGGGGAAATTAAATTATATTTTGTGACATGGGAAAATTGCATGAGAATCAAATTTGTTTCTATAAATAAAATTTATAAATAGCCATACCTATTTGTTTCTGTATTGTCTATACTTCCTTATCTTTCACAACAACAAAGTTGTTCAGAGCCCTTATGGCCCACAATGCTTAATATACTTATCATCTGGCTCTTCACAGGAAAAATTTACCATGCCCTGGTCTAAAATAACAATAGATTAAAACTGTTTTAGCGGAGTGCTCACTATGTTTGTTTCACTGGAATCATCTGCCCTTTTTTTTGCAGTGCTTTTTCTATTTTTATGTATGAGGAAGAGGGACAAAGAGGAGCAATCAGTGTTCTCCTTAGTATCCTCCTGTCTGAGAATTAAAGAAATTACGTAGTCCCTTTTAGCAGGAGCTTAGTGCTGTTTCTTTTCCCCTGTTCTGTTCAG
Seq C2 exon
GTTACATGTTCTCTCGCATTGAAGAAGAGCATTTGTGGGAGTGCAAACAGCTGGGCGCTTACTCACCAATCGTCCTCTTGAACACCCTCCTTTTCTTCAATACCAAATACTTTCAACTACGGAATGTTACTGAGCACTTGCAGCTTTCTTTTGCCCATGTGATGAGGCGGACGAGGACGCTGAAGTACAGCACCAAGATGACATATCTGAGGTTCTTCCCACCTTCACAGAAACAAGAGTCGGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.024
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
NA
C2:
PF120123=DUF3504=PU(47.7=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTTTTACTGAGCCCTATTCCA
R:
CTGGTTCCGACTCTTGTTTCTGT
Band lengths:
334-1773
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]