HsaINT0186041 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35879573-35881315:+
Coord C1 exon
chr1:35879573-35879684
Coord A exon
chr1:35879685-35881066
Coord C2 exon
chr1:35881067-35881315
Length
1382 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
3' ss Seq
GTACCCCTTCTTCTGTCTAGGTT
3' ss Score
8.67
Exon sequences
Seq C1 exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACTGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAACCTACAATACTTCCTAATG
Seq A exon
GTAGGGTGATTTTTTTTTTATTGTTTTCATGATATGCTTTCTTAAATTGCTTAACTTTTTTGGTTATCTTTAAAAAAATTGTTCATTTTTATTTCTGTCCAGATTTATACCATATTTGGACTTCTGAGGAGACGGTCTTTGGTTTATTGTTGATTGTTTTAGGAAAACTGTACAAGTCATATAGCACATGTATAGATACTGATTGCAGAAAATATAAACTAATTTGAAGTTACATTTACCTTTTTAGAAACCATTTTTGATCTGGTAGCATTGGTGTAGCTTTCACATATCATATCTGCTAACAGTGGACCTTTTTTGGTAGTTTGTATGTATACTGAACTGTTGTTAAGAGAGTTAAGTCCTCGTCCTTGAATTATCTTTGACCAGATGTCATCAGACAAGTCCATAATTCACTCCAGGTCTCAGGCTGAGGTGAATGAAGAGGTTCAATGTTATGCTTAGTAATATATGCACCTTTCTGTTGGGCTGCAGAGCACCTTTAACAGTAAGCTTAATGATCTCCAACAGGAGTTTGCAAACTATGGTCCATGGGCCAAATCTGGCCTGCTCCCTGTTTTGCAATCTATGAGCTAAAAATTGTTTTTACATTTTTAAATAGTTGGGGAAATTTTTTTAAGAATTCCTATTTCATCATGTGAAAATTATATTAAATTCATGGCTGGGTGTGGTGGCTCACACCTGTGGTCCCAGGTGTGACTTTGGAAGGCTGAGGCAGGAGGATCACTTGAGCCCAGGAGTTCAAGATCAGCCTGGGCAACAAGGTGAAACTCTGTCTCTACAAAAAATAAAAAAAATTAGCTGGGCATGGTGGTGGTGCCTTGTAGTCCCAGCTACTCAGGAGGATGAGGTGGGAGAAGCACCTGAGCCCAGGAGTTTGAGGCTGCAGTGAGCCCTGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGTAAGACCCTGTCTCAAAAAAAAGAAAAGAAAATTATATGACTATAAATAAATTTTACTGGCATATAGCTCTGCCTGTTTATGTGTTCTCTACAGCTCCTTAGTTTCTACAGCAACAGCGTTGTTCAGAGCCTATATGGCCTACACATCCCAAAATATTTACTTTCTGGCCCTTTATAAAGACAGCTTAACCCCTAATCTAAAATATCAATAGATTAAAACGGTTTCAGGAGACTCCACGAACGGTGTCTACTTGAGTGGAATCATCTGCCTTTTTCTTTGTGGTGCGTTTTCTGGTTTTCTGCATAAGGAAGAGGGGAAAGAGGAATAGTCAGTTTTTCTCTTTATATCTCCCTGTCTTAGAATTTGAGAGATTACTTAGTCTACTTTAGCAGGAGCTCAGTACTGTTTCTTGTACCCCTTCTTCTGTCTAG
Seq C2 exon
GTTACATGTTCTCTCGCATTGAGGAAGAGCATTTGTGGGAGTGCAAACAGCTGGGCGCTTACTCACCAATCGTCCTTTTAAACACCCTCCTTTTCTTCAATACCAAATACTTCCAACTAAAGAATGTTACTGAGCACTTGAAGCTTTCCTTTGCCCATGTGATGAGACGGACCAGGACTCTGAAGTACAGTACCAAGATGACATATCTGAGGTTCTTCCCACCTTTACAGAAGCAGGAGTCAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
NA
C2:
PF120123=DUF3504=PU(47.7=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATTTTTACTGAGCCCTATTCCA
R:
CTGGTTCTGACTCCTGCTTCTG
Band lengths:
334-1716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)