GgaINT0137503 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4671557-4673202:-
Coord C1 exon
chr23:4673091-4673202
Coord A exon
chr23:4671806-4673090
Coord C2 exon
chr23:4671557-4671805
Length
1285 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
TCTCTGCACATTGTTTCTAGGTT
3' ss Score
8.92
Exon sequences
Seq C1 exon
TACCTGTTTGAGAATGGTAGAATAGATAACATTTTTACCGAGCCCTATTCCAGGTTTATGATTGAACTTACAAAACTTTTGAAAATCTGGGAACCTACAATTCTTCCAAATG
Seq A exon
GTAGGACAATTATTTTATTTTGTGTAGCTGCATGACAAAGCCTTATTATGAGTATTTTTCTCAGTGCCATGAAGAAGGATGTGATCTGAGACATTCACATTAGTCTCCTCTTTCTCCACCATGCAGTTGTTTGTGGTAGACTAGAATCATGGATTATGTGTCTATCTCTACCAGTTATGGGTTTCATTTAAAGATACCTTTCCCTCATTTGATCAATCTCTCAGCTCCTTTAAAGGCTTCCCATTCCTGTATTCAATGTGCTAGTTCTCTTCCCTCAAGTTCGAGCTAATCTTTTTGAATACAGAACTGTGTGCAGTATTTGAGATGAGTTGCTCGTTGTGGAGCTAAAGAAGTATTTCCATATCAGAACTGGAAATACTTCTGATAATCAGAGGATCATATAAGGAAATCATAGGAGTCTTGCCTCAACTCCTTGACTCCAAGTTCTTCTAATCTCAATCCCTTCCACATTAAGAGTTCCCCAATTCTGCAGATATTATTAATTGTTCTTAGAGGATATTCATGCAGTTTATGAGTATATAAGATCTTTTTTTCAGATTACCACCAAAACATGAGTGATACTGACAACTCCATAGAAGGATCTGAAACTGCCTTTTTATTTACAACTTTCTGTTGGTGCAGAAATAACCCATTTGCTTATAGGTAGCTGTGTACAGTGAAGTTTTCTTGCAGAACAAATCTCTCATCGGCCTCAATTTCTCCTTCCTAACTTAGGATGATAAAAATGGACAATGTGTGTATAGAGATGGTGTATTTTAAGCTCATGCTCCATGTCATAGGAGCTGGGCGTTTTTGCAGTTGACTGACTCCAGTTTAATGCAGTGCAATTAAAACTCAGTGAGATTCTGCTGATGTCTGTAATCTTCCTTTATATACCTTTATCCATTCACCAGGTGTTGGAAGATGGTGCTGCTCCACAATTTCCCACATGCCCTCTGTGTTCTTGCATGCAGTTCTCTTGGTTTTATATCACAGTTACCTATGATAGGTCTGACTTTGTTCTAATGCACAGTTCATTCATGTACAAGGTTAGCTGAAAGGGGATTTACATGCATCTCTGACAGAATCTGCCAACGTAATTTGACTCATTTCTACGTCCTACTCTGCTCACGTATGAGGGTTTCATTGCTTTGGGAAGATGGGGAAAGTCTCTTAGATTGCCAGCAGCCTGTAAAAGCCATTACATTCCTTTGTAACTGAGCATGAGGAACTGTCCTAAAATTGCATAGGTGACATTTTTTCTTTCTCTGCACATTGTTTCTAG
Seq C2 exon
GTTATATGTTCTCAAGAATAGAAGAGGAACACTTGTGGGAATGTAAACAGCTGGGTGCATATTCCCCCATAGTTTTACTGAACACACTGCTATTCTTCAACACCAAATACTTTCAACTAAAGAATGTCAGTGAGCACCTGAAGCTGTCCTTTGCCCACGTCATGAGACGGACCCGGACTCTGAAGTATAATACTAAGACAACATATTTACGTTTTTTCCCACCCTTTCAAAAACAAGAGGTAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
NA
C2:
PF120123=DUF3504=PU(47.7=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTTGAGAATGGTAGAATAGA
R:
CCTCTTGTTTTTGAAAGGGTGGG
Band lengths:
351-1636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]