DreINT0139558 @ danRer10
Intron Retention
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14726665-14729199:-
Coord C1 exon
chr17:14729085-14729199
Coord A exon
chr17:14726914-14729084
Coord C2 exon
chr17:14726665-14726913
Length
2171 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GTGCTGTTGTGTTTGCACAGGAT
3' ss Score
8.41
Exon sequences
Seq C1 exon
TGCCTGCTTGAAAACGAGCGTCTTGAGAACATCTTCACAGACCCACTGTATAATCAGTTCATCACCGACATCACCACACTGCTCAAGGACTGGGTCAACAAAGTGTCACCTGGAG
Seq A exon
GTAAACATTTTTAAAAATCTTTTATTTTTTGTTGCTGATTGTGTATCAGACATATAGCTTTAACTTTCCACTGAGGCCATATCAATAGCTAAACCTGAAATGCTAGTTCTGGGCACATCATCCAAATGCTTTGAAATTGTAGGTCTGAGGAGTGTTTTTTTGTTTGTTTTGTTTTTTTTAGAATTGATTTGAATAAACCGTATTTACTTGTATGCACACTAACTGCTTGCTTACAAAGCTGGTTAGCTTAATAACTTGAAATGTCATGCATTACACAATAAAATAATATTTTAAATCCTGTTTTGTGATAGTATTATTGTTCATGCAGTTAGACTTGTTTAATTAATTGTAATTCGGACGTAATTCATTTTGATGGTCCCCATTGGACATTTTATTGACTTTAAGTTTAATTGCAAATACATGCCAAGTACTTCTCATTTGAGTATTAGTAGACTGTCTGCTTAATATCTGCTGATACTGCTCCTTCAATTAATTGATTATAAGAAACTTTGCAAGTACATGTCAGATCACATTAACCCTAACAGTCTACCTATAATCTAATGAGAATTAGTTGGCTTGTAGATGAAATGTAACTCAATTTTAACAAAAAGCATTAAAGTTACCATTAAAATAAAGTGATACCCAATTAAGAAAGTGCATGAAATGTTTGTACCTTTAAAATATTTGTTTTAATACTAATAAAAAAGGATTAAATAAATTATTTTACTTATATATTTATGTACTTATCATTTATATTTTTTTAGCAATTCACAATATAATGATATTTTAAAACCTACTTATGTAATAGTATCATTGTTCATGCAGTTAGACATCATTTTAATTAAGAAACTGCATGACATATTTGTACCTCTTTAAAATATTTGTTTTAATACTGATAGAAAAGAATTTAAAACGATTAAAATATTATATAATATAAAATCCATATAATATAAAATATTAATCTACTTTATTATTCATTTATTTATTTAGCCAGGATGTATTATTATGTTTATCAAAAGTGACAACTTTTTAATGAATATTTATTATAAATGATTATAAAATTATATAATTATTATGAAATAAAAAAAGCAATTAGAATTTTACAAAGTGTTTAAAAGGTAGATTTTTCCAATGAATCATCTGTTGAACTGCATCCCAATCATCCCAAATGCTGCAGAAGAACTATTGGAACTCGCAAGTACCCAATATTCTCACAGAAATCAGTCAAGTTTGTTGAAGGAAAAATCATTGTTTGGGGTTACATTCAGTATGGGGGCGTGCGAGAGATCTGCAGAGTGGATGACAACATTAACAGCCTTAGGTCTCAAGGCATTTGTGCTGCCCATTACATTACAAAATCACAGGAGAGGGCAAATTCTTCCGCATGATAGCGCTTCTCCTCATACTTCAGCCTCCAGCCTAAAGAAGTTCAAGGTGTTCCAGGATTGGCCAGCCCAGTCACCAGACATGAACATTATTAAATATGTCTAGGGTAAGATGAAGGAGGAAGCATTGAAGATGAATCCAAAGAATCTTTTTTTTTCCCCTTTATTTTTATGCCTAGAACAAATTACATTATTTATACAGAAGATTGTAATTTTTTAAAATCCAAAGAATCTTGATGAACTCTGGGAATCCTGCTGGAACTTTGTCTTTGCCATTCCAGATGACTTTATTAATTAGTTATTTGAGTCATTGCAGAGATCAATCGATGCAGTCCCCCAAGCTTATGATGGGAGTCATACACAATATTCATTCTTTTTCCACTGCACCATGGCTATACTGTACATTATTTCAGTTAAGTGACAAGACTTTTGTCTCAGCAATGTCAGACCTTACGTAATTAAATAATTGAAAATCAAGGCATGATCATATTCTATTTTGGTAAACAAAGCCTAAGCGTAATCTAGAGCCCTTTGCCTTTTTTGTAAGCCACTTTTGATACCAAATGATCAACTAGAAGTCAAATTATTATTTGTTATTCCTAAAACTTGGATAGGCGACAAGACTTTAGTTAGGTAGTGTATGCCCAATTTGTAATCAAGATAATATAGGCTTGCTAAGTATAAAATACTTTTCACAAACAACAACAGACTCAACAAACCTTTAATGGTAACCTTTCTTGATCTCTTTTGAAGGGTTTGATTGTGTGTGCTGTTGTGTTTGCACAG
Seq C2 exon
GATACATGCACTCGCGGGTGGAGGAGGAATACCTCTGGGAGTGTAAGCAGTTGGGAGCTCTGTCTCCTATTGTTCTGCTTAACACGCTGCTGTTTTTCGGATCCAAACTGCTCAACCTGAAAACGGTTGAAGAGCATCGACGGCTCGCCTTTTCCAATGTCTCCCACTGCTCCAAGACCACCAAAAGTGGCTTGACCTCTTACCTTCGCTTTAGGCTACCTAACAAAGAGGAGGAAAAAGAGAAGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681:ENSDART00000154690:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
NA
C2:
PF120123=DUF3504=PU(48.3=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]