RnoINT0169175 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144884364-144885930:-
Coord C1 exon
chr5:144885819-144885930
Coord A exon
chr5:144884616-144885818
Coord C2 exon
chr5:144884364-144884615
Length
1203 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
GCTGTTGTCCACCCCGCTAGGTT
3' ss Score
7.51
Exon sequences
Seq C1 exon
TACCTGTTTGAAAATGGTAGAATAGATAACATTTTTACGGAGCCCTATTCCAGATTTATGATTGAACTTACCAAACTCTTGAAAATATGGGAGCCTACAATACTTCCTAATG
Seq A exon
GTAAGGGGATTGTTTTTAATTATTTTCTGATATACTTGTATAAATTGATTTCTAAATATTTCCTATGTTGCAATATAATCTGTTTTGAGTAATTCAGTTCCGCTTTTAAGGACGGAGTCTTAGATTTATCGCCGAGCACTTACTGTCAACAGTTGGTTATGAAACTAATGTACAGTGGGGATTAGAGCGTTTTGTCTGATAGCATCATGAAAGCTGAATACTAGTCACTACGGATTTACCCAGTGCATTCCATCATGCACAGGTGATCTTTTCAGAGTCTTGGTGATCTGTACTTGTTTTACCCCTTGTTAGAAAAGTTCACTCGCACTCTCGGGCTGCTGTGACTGGAGAAGTTAGGGTAATAACATGAATGTGTCCTTGCTGTTAAGTTCTGGAGAACCTGTGAAGCATTCTAAGCCACGTGCTGTTTTGATGAATTTAACAGAGAGGCAGCTGGCAACATAGATTTAGAAGTAATAAAGTCATGTTCATGGATGGTCTCCCAAGAATAGAATATAGAAGCAGCAACAGAGAGAATTGAGAGAGCATTGGGTTAGACCTGAACTGAGGGACATGGAGAATCCTCTACAAGGAACAATACAGTTTGTTAAGACCTTGGCCTTTTCAATACGAATTCCAATCAGTCCTGAGGTGCATGGCTGTTAGTGCAAGTTAAGAATGGGTGGGCAGGAGAGAGGTACATGTGCTCCCCAGTGACTGTGGCTAAACAGAAGGAACTGACTAAACATGAATCTGATGGGCTGGCCAGTAGCTGCTTAACTCCCTGTGGACCAAATCTGGCTTTGTCCTGGTTCTGTCTGAGCTAATAAAAAAAAATTGTTTTTATTATTTTTATTTACTTTTTTATCCTAATATCTTCCTCCTTCTAGTCCCTCCCTCTCACCTCCCCATTTATGAAACTTATGAAACATGAAAATTGCATGAAATTCAAGTACGTCTATAAATAAGCCTTACTGTCTATGGCTCTTTGCTTTCTTCAACAAAAAGTTGTTCAAAGAAAGTGGCCTTCTCAGGAACGACTAAAAACTGCCATGGAGGGCTGGGTCTGTCTAGCTAGAGTGCTGTTCTCCTGGGCTGCTTCTGTGTACCCACAGAGAAGGGGTGGGAGAGCAGGACTCGTTGTCCTCCTGTGCTCCTCTGTGGAAGCGGGGATTATATGGCTGCTGTTGTCCACCCCGCTAG
Seq C2 exon
GTTACATGTTCTCCCGCATCGAAGAAGAGCACCTGTGGGAGTGTAAGCAGCTGGGTGCCTACTCGCCCATTGTCCTGTTGAACACCCTCCTGTTTTTCAATACCAAATACTTCCAACTGAAGAATGTCACCGAGCACTTGAAGCTCTCCTTTGCCCACGTGATGAGGCGGACCAGGACTCTGAAGTACAGTACCAAGATGACGTACCTGAGGTTCTTCCCGCCGCCGCCACAGAAGCAAGAGTCGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF120123=DUF3504=PU(0.1=0.0)
A:
NA
C2:
PF120123=DUF3504=PU(48.0=98.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGATAACATTTTTACGGAGCCCT
R:
CTGGCTCCGACTCTTGCTTCT
Band lengths:
342-1545
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]