BtaINT0164793 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021023 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:HGNC:13055]
Coordinates
chr3:110968467-110969301:-
Coord C1 exon
chr3:110969186-110969301
Coord A exon
chr3:110968743-110969185
Coord C2 exon
chr3:110968467-110968742
Length
443 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTATTTGTTTCTTCTTTCAGAAT
3' ss Score
12.02
Exon sequences
Seq C1 exon
GTGTGCAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATCCCTCAGTATCACCTAGCCATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGTTGTGTGGTAGCTTTCCAG
Seq A exon
GTATGGCTTCAGGACTCTTCCTTTTCTCCAGCCAGTTAGTAGCCTACAATAGTGAAGTAAACTTATTAGGTGTTTGCTAACTGCCTGGATTGCCGACATTTCTGTCTCAGTTTTAGTAAATAAACTAGGGTTCTTTGGTCCATCCTCTATTTGGATGCATGTTATTTAATTGCTTCCTGTGAAATTAAATGATACTATTATTACCTAGATTATCTATTGGGAGGATATTATCTTTAAAGATTATCATTAGTTAAATTATTTTATTTTTTGGATGTAAATAACACTCCCCCCATTCAATTATAAGCTACTGAAAGGCAGGGATTTTTGCCTGTTCACAAATGTATGTTAAGTGCCTAGAACCATGCTTGAGATAGGTAGGTACTCAGTGCCCTCTTATTTGAAAAAGTGAGTAGATTGATCTTTTTATTTGTTTCTTCTTTCAG
Seq C2 exon
AATTTGTTCAACAAACCAGCAGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAAGTAATTGTAAGCATCCCTACAGGTTCAACAGTGTCAGCAGGAGGGGGTAACACCTCTGCTGTTTCTCCCACTTCCATCAGCAGCTCTGCTGCAGCTGGTCTCCAGCGTCTTGCTGCCCAATCCCAACATGTGGGGTTTGCACGAAGTGTTGTAAAACTCAAGTGTCAGCACTGTAACCGTCTTTTTGCCACAAAACCAGAACTTCTCGACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021023:ENSBTAT00000027998:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=PU(61.0=27.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACCTCAGCAATCCCTCAGT
R:
GGTTTTGTGGCAAAAAGACGGT
Band lengths:
346-789
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]