DreINT0139543 @ danRer10
Intron Retention
Gene
ENSDARG00000057681 | si:ch211-266o15.1
Description
si:ch211-266o15.1 [Source:ZFIN;Acc:ZDB-GENE-131127-116]
Coordinates
chr17:14750314-14751437:-
Coord C1 exon
chr17:14751322-14751437
Coord A exon
chr17:14750686-14751321
Coord C2 exon
chr17:14750314-14750685
Length
636 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
TTTTTTTTTCTTTCCTGCAGGAG
3' ss Score
13.5
Exon sequences
Seq C1 exon
GCACTGCTTTCCCATGCACATCTTGCAAGAAGGTTGTCATTCCTCAGTATCATCTTGCCATTTCTGATGGCTCTATCAGAAACTTCTGCTCATTAGATTGTGTGGGCAAATTCCAG
Seq A exon
GTACAAATCCTTAATTTGCTGTTTCCAATATACATTTTATTATGATGAGTGGTTAGAATGATTTAGCATATTTTGTATATTGTTATAAATTAGTAGAGAATATATATAAAAGAAAGTCATTTAATTCTGTGATTCAAAGCTAAATTTTCAGCATCATTAGCATTACTTCATTCTATATTATTCTTCCCTGTAACATGATTCTACAGAAATCATTTGAATATTTTTTTGTGTTCAGGAATCATTTCTGATTATAATAACATCAGTTACGTTGTGAATGTCTTCATAACTCCAAATGTCATTTAAAAACTCTGATGTTGATTTTCCTGATCAAAGCAGTGTATTTGAAGCATTAGTTTCTCGCTTCCTCACACTGCTGGGTTCAGAATCTACAATATCAGTTTAATTTTTGCATGATCATAGGGTGTTGAGATGATTCATAAACAACACAATAGAGGCACAGTAATTGATTGTTTAATCTTGAATAGTGAGTCATAATAAACAACAACACTTCAGGACGTCATGACAGAAAGAATAGCTTGTTCACATGTTTGTTTTCATGTGTACGTTGCATCTGCTCTCTTTTGTCTTCAATATTCTAATACAACAAATCATGATTTTTTTTTTTCTTTCCTGCAG
Seq C2 exon
GAGAAGCTAAACTCTCCTGTGCCTCATAATCAGATGAATGGTACTTCACATACACCCCAGCCCCAGAGTGCCGTTCCCCCTCCACCTCGTCCCACTGCTGACCATCTCCAGCCCATTCAAAACTCATCCAGCACAAGCCACAATCCTCCTCCTCCTCCTCCTCCTCTTCCACCTCCTCCACCATTTGTACCACCATCAAACCCAAATCCAGTTCCCACATACGTGCCTGCTCCTGGTGTGATGAACTCGCAGGACACCCAGCAGCAGCAGCAGTGGCCGAGCAAACCTCCCTCGTCCTCAGACCCGATGCGACTGACATGCAGACAGTGCCAGAACCACTTCAGCTCCAAGCCTGAGGTCTTCCAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057681:ENSDART00000154690:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.790
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(90.2=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(56.8=16.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCTTTCCCATGCACATCT
R:
CAGGCACGTATGTGGGAACTG
Band lengths:
343-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]