HsaINT0186024 @ hg19
Intron Retention
Gene
ENSG00000146463 | ZMYM4
Description
zinc finger, MYM-type 4 [Source:HGNC Symbol;Acc:13055]
Coordinates
chr1:35851675-35852879:+
Coord C1 exon
chr1:35851675-35851790
Coord A exon
chr1:35851791-35852603
Coord C2 exon
chr1:35852604-35852879
Length
813 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTGTTGTTTTGTTTTTCCAGAAT
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTGTACAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATTCCTCAGTATCACCTAGCCATGTCAGATGGAAGTATACGCAACTTCTGCAGCTACAGCTGTGTGGTAGCTTTCCAG
Seq A exon
GTATGGCTTCAGGAACCTTCCTCTTCTTCAGTCAGTGAGTCACCTACTGTATGAGTCTGTTCTTGCACTCCTCTAAAGAAATACCCTAGACTGGGTAATTTATAAAGAAAGAGGTTTAATTGGCTCACAGTTCCACAGGCTGTACAGGTAGCATGGCTGGAGAGGCCTCAGGAAACTTTCAATTATGGCGGAAGGCGAAGGGGAAGCCGGCACGTCTTACATGATGGGCTCAAGAGGAAGAGAGAGAAGCGGGAGGTGCTACACTTTTAAACAACCAGATAGTGAGAACTCACTATCACCAGAACAGCAGGGGAGAAATCCACCCCCATGATCCAGTCACTTCCTGCCAGGCTCCTCCCCCAACATTGGGGATTACCGACTGGACATGAGATTTGGGCAGGGACACGAATTCAAACCTATCACCTACTATAGTAATGCACATTTATTAGGTGTTTGCTAGGGCCTGGGTTGTATAAGTTTCTATATCATTCCTATTAAACTTGGATTTGTAGTTCATTCTGTATTTGGAATTTAATTTAACTGCCTTCTATAAAATTGAATGGTACTTTTATCACCCATATTATCTATTGGGAGGATATTATTTTTGAGGAAGATTATTAGTTAAGTTATTTTATTTTTTCATCATAAATGAGACTCCCCCCATTCCGTAATAAGCTGCTCAGAGGCAGGAACATTGCCTGTTAACAGATGTACCTTACATGCCTAGAACGGTGCTTGGCATATGTAGGCACACAATACTTCTTTGTTTTAACAAAGATTAAATTGATACTTTTTGTTGTTTTGTTTTTCCAG
Seq C2 exon
AATTTATTCAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAAGTAATTGTAAGCATCCCCACAGGTTCCACAGTGTCAGCCGGAGGAGGTAGCACATCTGCTGTTTCTCCCACCTCCATCAGTAGCTCTGCTGCAGCTGGTCTCCAGCGTCTCGCTGCCCAGTCCCAGCATGTTGGGTTTGCACGAAGTGTTGTGAAACTCAAATGTCAACACTGTAACCGTCTTTTTGCCACAAAACCAGAACTTCTTGACTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146463-ZMYM4:NM_005095:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(92.5=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(61.0=27.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAGCAATTCCTCAGTATCACC
R:
GGTTTTGTGGCAAAAAGACGGT
Band lengths:
343-1156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)