GgaINT0137486 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4683410-4683919:-
Coord C1 exon
chr23:4683804-4683919
Coord A exon
chr23:4683683-4683803
Coord C2 exon
chr23:4683410-4683682
Length
121 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
CTTGTTTTGCTCTTCTGCAGAAT
3' ss Score
10.62
Exon sequences
Seq C1 exon
GTGTTCAAGTTCAGTGCAACAGCTGTAAAACTTCAGCCAACCCTCAGTATCACTTGGCTATGTCAGATGGGAGCGTACGCAATTTCTGCAGCTACAACTGTGTGGTAGCTTTTCAG
Seq A exon
GTGTGATATCTGGGATTTCTTCTTAGCTCAATTAGTAGAATAATCAATCGGTGATATCAATATCTGGGGTGTCAGGTAAAATATACAACTGTAAAATAAGGCTTGTTTTGCTCTTCTGCAG
Seq C2 exon
AATTTGTTCAACAAACCTGCAGGAGTGAACTCCTCGGTCGTACCCCTGTCGCAAGGTCAAGTCATTGTAAGCATTCCCTCGGGGACAACGGTGTCAGCAGGTGGCACCACCTCCACTGCATCTCCCAGCTCCGGGAGCAGTTCAGCTGCAGCTGGTCTACAGAGGCTGGCTGCCCAGTCCCAGCAAGTCACTTTTGCCCGCAAGGTTGTAAAACTCTGGTGTCAGCACTGTAACAGATTATTTGCAACCAAACCAGAACTGCTTGACTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=PU(60.0=26.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGGAGCGTACGCAATT
R:
CTTGCGGGCAAAAGTGACTTG
Band lengths:
257-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]