RnoINT0169158 @ rn6
Intron Retention
Gene
ENSRNOG00000012397 | Zmym4
Description
zinc finger MYM-type containing 4 [Source:RGD Symbol;Acc:1309545]
Coordinates
chr5:144919412-144920173:-
Coord C1 exon
chr5:144920058-144920173
Coord A exon
chr5:144919691-144920057
Coord C2 exon
chr5:144919412-144919690
Length
367 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TATTGTCTTACTTTTTTCAGAAC
3' ss Score
9.12
Exon sequences
Seq C1 exon
GTGTCCAAGTTCAGTGTAACAGTTGTAAAACCTCAGCAATCCCTCAGTACCATCTAGCCATGTCAGACGGGAGCATACGCAACTTCTGCAGCTACAGTTGTGTGCTAGCTTTCCAG
Seq A exon
GTAGGACCTTGGGGTCTTCCTCTTCCTCAGTCAGGGAGTCACCTGCTGTGCTCATACACACTTACTGTTTCCTTGTGCCAGGCTACTTGTTTCTCTTAGAGCTTTTCAGTTAGATTAGTAGTTCAGCCTGTACAGTCGTCATCCATGAAATTTAACGACACTGTTGAGAGAGTACTAGTTTTGATGATTATTGGATGGTTTTTTTCCACATGAATGAGACTTGCCTCATTCAGTTTTAAGGTATTCAAAGACAAGGTACCTAGCTTGTTGCATTACTAGAATCTTTCTTGGCATACAGAGGGGAACAATTTCTAGTCTTAGAACAAATGATTAAACAGACCTATTCTTATTGTCTTACTTTTTTCAG
Seq C2 exon
AACTTGTTTAACAAACCAACTGGAATGAATTCTTCAGTAGTGCCCTTGTCTCAGGGCCAGGTGATCGTGAGCATCCCCACTGGTTCATCAGCATCCGCAGGGGGAGGGAGTACCCCAGCTGCCTCCCCCACCTCTGTCCACAGCTCCTCTGCGGCTGCTGGGCTCCAGAGGCTGGCTGCCCAGTCCCAGCATGTTGGCTTTGCACGAAGTGTGGTGAAGCTTAGGTGTCAACATTGTAACCGTCTCTTTGCCACAAAGCCAGAGCTTCTTGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012397:ENSRNOT00000016992:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(92.5=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(61.0=26.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAGCAATCCCTCAGTACC
R:
TGTGGCAAAGAGACGGTTACA
Band lengths:
342-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]