BtaINT0164812 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021948 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:HGNC:13050]
Coordinates
chr3:111252768-111253988:+
Coord C1 exon
chr3:111252768-111252883
Coord A exon
chr3:111252884-111253715
Coord C2 exon
chr3:111253716-111253988
Length
832 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CCTTATCTGTATTTATTCAGAAT
3' ss Score
7.2
Exon sequences
Seq C1 exon
GTGTCCAGGTTTTGTGCCATAGTTGTAAAACTTCAGCAGTCCCTCAGTATCACCTGGCCATGTCCAATGGAACGATACACAGCTTCTGCAGCTCCAGCTGTGTGGTGGCTTTCCAG
Seq A exon
GTATGACCTTAGCTAGTGCTGTACCCTTGCAGTTCTCTTAGGCAGTGGTCTGTGGCAAAATGTTAACTGCCGAAGGGACCATCCTTATCAAAGATTAAGCTTCAGTTAGGAAGAAGAGATTCTGTTCAATTATAGTCCAAGAGGTCATTTCTGCAAAATGTCTGAGCCCAAGATTTGAGCTTTAGTCCTTCTTTATTCAGCGTTCTCACCTAAACTGCCTTTCTCTTCCACTTTCTCCCTTGGCTGTCTCCCTTTCAAAAGAATGGAAGTAGGCTGTGGTTTGGATAGGTGGCATGGTGATGGGCACCTGTGTCCGTTCCTCTCATCCTGGGCCAGATACATCATGACTCCTGGCACAGAATAGGAAGCCTCCACTTGTCACATTCTCTCCTTACTCTCTAATACACAGAGAAAGGGTAGAATTTAGTGATCCTCCTGGGTGGGAAGATCCCTGGTGTGGTATCCTTGGCCCCAGGGAGAAAGCAAAGTGGCCACTGTGCTCTTAATAGCTAGGAGATTCTGGTTGGTAATAGGTGTGCAGGTGGAGGGAAAGAAGAAGCCTGGTCTTACTTATTAGAGTTATGTACTAGAGATCTTTGTCTGGAAAGCCTGAATTTTAGTCTGCAGCGTTTTTTTTTTTTTTGCAACCTTTTAGTGCTACATTCCTCAGTCCTATTCTGGGAATATGCCATTTCAACTCTTCTGTGAACTCCTTAAGAAAATTTTGCAGAAACATTGGGGGAAATTAATTTATTAAAATGAGAAAATGAAAATGACCAAGTTATCTTATTTCTTACTTGATACAATCTTTGCCTTATCTGTATTTATTCAG
Seq C2 exon
AATGTATTTAACAAGCCAAAAGGAGCAAACTCTTCGGCAGTGCCTGTATCTCAGACCCAAGTGATTGTAAGCCCACCCTCTGGGTCAGCAGTGTCAGCCGGAAGAGGTCACACCTCTGCCTTTTCCCCCCGCTCCGTCAGTGGCTCTGTTGCAGCCAGTCTCCAGCCTCCTGCTCAGTTCCAGCAAGTTGCTTTAACCCATAGGATTGTCAGACTCAGGTGTCAGCACTGTAACCATCTGTTTGCGACAAAACCAGAACTTCTTTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021948:ENSBTAT00000029263:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(92.5=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(57.9=24.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCAGGTTTTGTGCCATAGT
R:
TGCTGACACCTGAGTCTGACA
Band lengths:
342-1174
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]