RnoINT0169201 @ rn6
Intron Retention
Gene
ENSRNOG00000013865 | Zmym6
Description
zinc finger MYM-type containing 6 [Source:RGD Symbol;Acc:1561833]
Coordinates
chr5:145162111-145163897:+
Coord C1 exon
chr5:145162111-145162226
Coord A exon
chr5:145162227-145163621
Coord C2 exon
chr5:145163622-145163897
Length
1395 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TTTGCTTTGTATTCATTTAGAAT
3' ss Score
7.59
Exon sequences
Seq C1 exon
GTATACAGGTTTTGTGTCATAGTTGTAAAACTGCAGCAGTCCCTCAGTACCACCTAGCAATGTCAAATGGAACGATTTGCAGCTTCTGTAGCTCCAACTGTGTGCTGGCTTTCCAG
Seq A exon
GTATGATGCAGGTGCTGTTTCTAGTTCTTTCTAGTTCACTAAGGGATTGATCTATGGCAAAACATTGTAAAAGGTTAAACTGTTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCTTCCCTCCTCCTTCCCTCCCTCTCACTCCTCCATCGCCTCCTCCCTTTCTACTTCCCTCCTTCCCTTCCCTCTCCTTTCCTTCCTTCCTTCCCTTCTTCCTTCCCTTCCTTCTTTTCTCAAGCTAGAGTTTCTCTGGTGTAGCCCCTGGCTATTCTAGAAACTGAGTCTGTAGACCAGGCCTGGCAAATTGAACTTAGGTCCTACCATGCCTCTGCGCCTCACTGAGTACTGGGAATTAAGAGGCATGTACGCACCACTGGTCCAGCATAAATTATTTTCTGTTACATTTATTTAGTATATGCTTGTATATCATAACATGAGCCATCTTGCTAGACCATTTTTTTCTTTACTACATTTTTTTTTGCTACATAGCCAGAATCAGGCTGGCCTCGAATGTGAGACAATCATCTTGGCTCTCTTTCCCAAGTTACAGTTTTACAAGCATGTGACACCTGTTCAGTGTTAAAGTGTTGAATGCAGGGTTTAAAAAAAAAAACCAACACTCTATTCAAGCAATGTTCCAAAGGTCATAGGTCATTTGTACAAACATTTGAGAATGTTTGAGGCCAGACATCCGGCTTTCTTATTCATGGTCCTTGAGTTAAGTACCTTTCCCTCCCACTTCTTCCTCTTGGTTCTCTTCTTTCCCTTTTTTCCTTTCAGGGTCTCCTCCTGTGTATAGTCTAGGCTACCCTTGGAACTTGATTTGTAGCCAAGGGTGGCCTGGAACTCTGGATCCAAATGTTGGGATTGTAGTTATGTGCCACCATACTGATTTTGGCTCTCTCCTTTATAAAAGAGTAGAGGCTAGCGTGTGGTTTAAGAGGTGGAATGGTGATGATCAAAAGCTTATCCGGCTCATGTGCCCTGTGTCCTGGACCAGAAATGTAATGATTCTCCGTCTGGATTTCTCCCCCTCTCCCGTTTCTACCCACTCTGTGCAGAAAGAGTAAAGAATTTCCTGTTTTCCTGGGTACGAGGATGCCTAGTGTGTCCACTGTCACACTAGCCATCGGGAGCCGGTTGGTGATATGTGTAGGGCTTGAGGAATGCATCTCTGGAGAATTTGCAGGAGTCTTCTGTTCTAATTCATTACCTTTGAGTGTTTCACTTTTTTTTAACCCTCCGCACTGGAAGGTATGCCACTGAAATTCTTTCTGTTAGAAGTAAACGTAAAAAATAAAAAATGCTTGTGGAATGAATTTATTAAAGTGAGGAAATTAAAGTAATTATGCTACATTATTTCTTATTTGGTAAAATCTTTGCTTTGTATTCATTTAG
Seq C2 exon
AATGTATTTAACAAGCCAAAGGGAAGGAACTCTTCATTGGCACCCATATCTCAAGGCCAAGAAGTGCTGAGCGCACCCATGCAGTCTGCAGTGTCAGCACGAAAAGAAGCCCCCGCCCCTTCCTTCAGCAGCCCCATCAGCAACCCTGCTGCAGCCGCTCTGGAGACCCTTGCCAAGGAGTCCCACCAGATCGCTTTGACCCTTTCCTTCTTGAAACTCACGTGCCTGCAGTGCAGCCTTCTGTTTGCCACAAAGCCAGAGCTGCTTTTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013865:ENSRNOT00000019135:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF064679=zf-FCS=PU(59.0=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGCAGCAGTCCCTCAGTA
R:
GCTTTGTGGCAAACAGAAGGC
Band lengths:
344-1739
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]