HsaINT0186070 @ hg19
Intron Retention
Gene
ENSG00000163867 | ZMYM6
Description
zinc finger, MYM-type 6 [Source:HGNC Symbol;Acc:13050]
Coordinates
chr1:35476359-35477606:-
Coord C1 exon
chr1:35477491-35477606
Coord A exon
chr1:35476638-35477490
Coord C2 exon
chr1:35476359-35476637
Length
853 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CCTTATTTGTTTTCATTCAGAAT
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTGTCCAGGTTTCATGTCATAGTTGTAAAACCTCAGCAATCCCTCAGTATCACCTAGCCATGTCAAATGGAACTATATACAGCTTCTGCAGCTCCAGTTGTGTGGTTGCTTTCCAG
Seq A exon
GTATGATCTAAGGTAGCACATTATGCATGTGGTTCTGTTAGGCATCGATCTGTGGCACAGTGTTAACTGCTGAAGGCCTGTTCTTATGAAAGTTTAAATTTGAATTAAAAAGAAAAAAATTTGTTTCATCCAGGGGCCCAACCAGGTCATTTCTACAAAATATCTGAACCCAGATATTGGGTCTCAGCAGTTTCTTCTTTATTTAGGATCCTAGCCTAAACTGTCATTCCCTCCCACTTTCTCCCTTGGGTCTCTCCCCTTCAAAAAGATGGAAGCTAGGATTGTGGTTTGGGTAGGTGGTATGGTGAAGAACAGTAGCCTGATGGGATTCACATACCCCTTCCTCTCATCCTGTGTCAGAAACACAGTGACTCCTGGCATGGAATTGTAAGCATCCACTTGTCCCATTTTCTCCTCCCTCTCTGCAATACATACACAAAGAGTAGAGTTTAGTAATCTCCAGGGTAGGAACATGCCTGATGTAGTATCCCTGGCATTAGGGAGAAAGAGACTGCTGGTAGCTATTGTGTCGTAGTAGCCATCAGAAGCTGGTTGATGATGGGAGTGCAGGTAGGGGGAAGTTTTAGGGGGAAGGAGAGGCCTGCTCTAATTTATTAGAGGCATATACTGGAGGTCTTTGTCAGGAAAGCCTGAATTCCAGTCCTTGACCTTTTAATGTTGTATTTCTCAGTCCTTTTATTCTGGAAATATACCATTTAAACTCTTTCTGTGAGATAGAAAATTTTAAAAAATGTTTGTGGGAGACTTGATTTATTAAAATGAGGAAATGAAAAGTACAAAGTTATCTTATTTCTCAGTTGATAAAATCTTTACCTTATTTGTTTTCATTCAG
Seq C2 exon
AATGTATTTAGCAAGCCAAAAGGAACAAACTCTTCGGCGGTGCCCCTGTCTCAGGGCCAAGTGGTTGTAAGCCCGCCCTCCTCCAGGTCAGCAGTGTCAATAGGAGGAGGTAACACCTCTGCCGTTTCCCCCAGCTCCATCCGTGGCTCTGCTGCAGCCAGCCTCCAACCTCTTGCTGAACAATCCCAGCAAGTTGCTTTAACCCATACAGTTGTTAAACTCAAGTGTCAGCACTGTAACCATCTATTTGCCACAAAACCAGAACTTCTTTTTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163867-ZMYM6:NM_007167:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF064679=zf-FCS=PD(92.5=94.9)
A:
NA
C2:
PF064679=zf-FCS=PU(60.0=25.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTCAGTATCACCTAGCCA
R:
AGAAGTTCTGGTTTTGTGGCA
Band lengths:
346-1199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)