BtaINT0165025 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016684 | ZNF202
Description
zinc finger protein 202 [Source:HGNC Symbol;Acc:HGNC:12994]
Coordinates
chr15:34848617-34850434:-
Coord C1 exon
chr15:34850315-34850434
Coord A exon
chr15:34849612-34850314
Coord C2 exon
chr15:34848617-34849611
Length
703 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTCCTCTCTGTTTCTACAGGAG
3' ss Score
12.06
Exon sequences
Seq C1 exon
CCTTTCCAATCCCCAGACTAGACGAGATCTCCCATGTCAGAGAAGAAGAGCCTCTGGTCCCAGACGTCCCAGAGCCTCAGGAGCCTGAAGAGCCAGAAATTCTGAGTTTTACCTATACAG
Seq A exon
GTGAGGAGTGATAGGGGATCTGCCCCACCCTCACCCCCTGGCTGGCAGTTCCTCTGGTCAGTGTTTCCCTCGCCCTCTGGAGAGCCCCTCTCTGGTTCTTGTAACGGCTCAGCCAACACCACTGTCTCCCTCTGAAGCCAAACATTCTCTCTTTTCTCCCCTCTTCACACCTGTCATTGGTTTCAGGGCTCTGTAATACAAAATGGTGACAGGAAAAAAAGGAAACTTTTGGAATTGCAGCTATACCATTTTTTAAGCCTTTACACAAACTCTTGATCCCTAGTCTCCACATTCGTTCTGCACACAGACTTCTCTAGTTGTGATGCACAGGTTTAGTCGCCTCACTTCATGTGGGATCTTAGTTTCCTAACCAAGGACTGAACCCACATCCCCTGCATTTAAAGGTGGGTTCTTAACCACTAGACCACCAGGGAAGTCCCTCCACATTTGTGAAAGGAGGATGATAATGTTTGTCCACATGAAGGCTGTTGCCAGCATGAGATAACATGTAAGAAAGTTCTCAGCATACAACAGGCACTCAGTTGACCAGTTACTTCTTTTTTTCCAGCCTCTGCAGTTGAGAAACATGATATTCTCTCTATACGGTCTTGCCCTCTCAGAACAATGTAAAACTCTCTCCACTGTGCAGAAGGCACACCTTCTACATCTGTAATCGCCTCCTTTCTCCTCTCTGTTTCTACAG
Seq C2 exon
GAGACGGGAGTGACGACGAAGAAGAGTGTCCTGGGCAAGAAGATCTGAGTTTGGAGGATCCACACAGGTCTGTGTCAGGAGATACAGAAATTCACCAAACTCCAGACTGGGAAATAGTCTTTGAGGATGATCCCGGTAGACTTAATGAAAGAAGATTAGGCACAAAGATGTCTCAAGTCAGTAGTTCAACGAACCTTCAGGAAACCATGCCCGTCCACCTGCTGTTAGGGAGACATCATAACTGTCCTGTGTGTGGAAAGAGTTTCACTTGTAACTCCCACCTCATTCGACACCTGAGAACTCACACGGGAGAGAAGCCCTATAAATGCATGGAGTGTGGGAAGAGCTACACACGGAGCTCCCATCTCGCCAGGCACCAAAAGGTACACAGGACCAACGCTCCTCACAAATACCCGCTAAACCGGAGGAGTCTGGGTGAGGCCGCCCCTCTGGTCCAGGCGGAGAGAACCCCACCCGTGGAGAAGCCCTATAGGTGTGAGGACTGCGGGAAGCACTTCCGCTGGACTTCCGACCTCGTCAGGCACCAGAGGACGCACACGGGCGAGAAGCCCTTCTTCTGTACCATCTGTGGCAAAAGCTTCAGCCAGAAATCCGTGCTCACCACCCACCAAAGAATCCACCTCGGAGGCAAGCCCTACCTGTGCGGGGAATGCGGCGAGGACTTCAGCGACCACAGGAGGTACCTGGCCCACCGGAAGACACACGCGGCCGAGGAGCTGTACCTGTGCAGCGAGTGCGGGCGCTGCTTCAGCCACAGCGCCGCCTTCGCCAAGCACCTGCGGGGACACGCCTCAGTGAGGCCCTGCCGCTGCAGCGAGTGTGGGAAGAGCTTCAGCCGGAGGGACCACCTCATCAGGCACCAGCGGACACACACAGGCGAAAAGCCGTTCACGTGCCCCACATGCGGAAAGAGCTTCAGCAGAGGCTACCACTTAATCAGGCACCAGAGGACCCATTCACAAAAGGCCTCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016684:ENSBTAT00000022184:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=NA C2=0.353
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8),PF134651=zf-H2C2_2=WD(100=7.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCCTGAAGAGCCAGAAA
R:
CGTGTGAGTTCTCAGGTGTCG
Band lengths:
350-1053
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development